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Information for unigene UN38918
| FASTA Sequence |
| Unigene ID: UN38918 | Length: 1475 |
SSR | | GCGGTGAGGATCGTAAATCGAGAGAGAGAGAGAGAGAGAGAGAGAGATATGCAATCCCGTTCCGCACTCGTCGTCTCTCGATTCAT
TCGACCGGCGTCGAGATTCTTTTCCTCCACTTCCTCCCCGATCACTCCCGTCTCCTCCGCAACAACTCAATCCCCCAGGACCCTCG
AGTCTCTCCGAGCGCGGCTGGCGGACGAGTCCCCTTCCCTCACCGACTTCATCCACGGCGACACCTACTCCGTTGAGGTCGGCACC
AAGAAGAAGCCCCTCCCCAAGCCCAAATGGATGAAGGAGTCGATCCCAGGCGGCGAGAGGTACGTCCAGATCAAAAAGAAGCTCAG
AGACCTTAACCTCCACACCGTCTGCGAGGAGGCCAAGTGTCCCAACCTCGGCGAGTGCTGGTCCGGCGGCGAAACCGGAACCGCCA
CCGCGACGATTATGATCTTGGGGGATACTTGTACACGTGGCTGCAGGTTTTGTAATGTGAAGACGTCGCGTACGCCTCCTCCTCCT
GATCCAAACGAACCGAACAATGTCGCTGAAGCCATCGCGTCCTGGGGTGTTGATTATGTGGTCATCACCAGCGTAGATCGTGACGA
TCTGCCTGATCAGGGGAGTGGCCATTTCGCGCAGACTGTACAGAGATTGAAAACATTGAAGCCGGAGATGCTCATAGAAGCTCTTG
TTCCTGATTTCCGAGGAGATGGTGGGTGTGTTGAGAAGGTGGCCAAGTCAGGGCTCGACGTCTTCGCACACAACATTGAGACGGTT
GAAGAGCTTCAGAGCTTCGTGAGGGATCACCGTGCTAACTTTAAACAGTCGATGGATGTGCTTAGGATGGCTAAGCAGCATGCCCC
CGCGGGGACATTGACGAAGACTTCGGTGATGCTGGGATGTGGGGAGACCCCTGATCAAGTTGTCAAGACGATGGAGAAAGTGAGAG
CAGCTGGGGTTGATGTTATGACGTTTGGACAGTACATGCGACCTTCTAAGCGTCACATGCCAGTTGCTGAGTACGTGACACCTGAG
GCTTTTGAGAGATATCGGCTTCTTGGCATGGAAATGGGATTCAGGTACGTGGCATCAGGGCCAATGGTGAGGTCGTCGTACAAAGC
AGGAGAGTACTACATAAAGTCCATGATAGAGGCTGATCGAGTTTCTCCTTCTTCCTCCTCGTAGATACTCGTTCCAAGATTTACGC
TATGATGTGAATTCTTTCACTTTATTTGCTTTGTTTATTCTGAAATAATGATTGAGGAGATGTAATACTACTATAATTGTCATTTG
TGTGTTTACTCTTTCTCTCTTACTATCATTTGTCCTTCGTCTTTCTCCGATGATACTATACGACTCTGCTCCATCGTCTAAGCTCC
ATCTGTTGAACTTGAGACAGTTGCGGTGATGATATAAATAAACCCTCTTTAGTGGTGTAGATTGTAGAATGAAGAAATCCAGTAAG
CGTGTTTTGTTGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002884228 hypothetical protein ARALYDRAFT_900465 [Arabidopsis lyrata subsp. lyrata] | 1802 | 5e-199 |
| NP_179682 lipoic acid synthase 1 [Arabidopsis thaliana] | 1783 | 8e-197 |
| XP_002306361 predicted protein [Populus trichocarpa] | 1598 | 2e-175 |
| ABK96318 unknown [Populus trichocarpa x Populus deltoides] | 1588 | 3e-174 |
| Q3LSN5 RecName: Full=Lipoyl synthase 2, mitochondrial; AltName: Full=Lipoate synthase 2; Short=LS 2; Short=Lip-syn 2; AltName: Full=Lipoic acid synthase 2; Flags: Precursor | 1583 | 1e-173 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q5BIP7 Lipoyl synthase, mitochondrial | 1001 | 2e-107 |
| O43766 Lipoyl synthase, mitochondrial | 998 | 3e-107 |
| Q5XIH4 Lipoyl synthase, mitochondrial | 998 | 3e-107 |
| Q99M04 Lipoyl synthase, mitochondrial | 988 | 5e-106 |
| O13642 Lipoyl synthase, mitochondrial | 937 | 4e-100 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9ZWT1 At2g20860/F5H14.17 | 1783 | 5e-197 |
| B9H5L9 Predicted protein | 1598 | 1e-175 |
| A9PIW5 Putative uncharacterized protein | 1588 | 2e-174 |
| Q3LSN5 Putative lipoic acid synthase | 1583 | 8e-174 |
| Q3LSN4 Putative lipoic acid synthase | 1582 | 1e-173 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G20860.1 LIP1 (LIPOIC ACID SYNTHASE 1); lipoic acid synthase | 1783 | 3e-199 |
| AT5G08415.1 lipoic acid synthase family protein | 998 | 3e-108 |
| AT1G44191.1 Encodes a ECA1 gametogenesis related family protein | 129 | 2e-007 |
| AT5G38560.1 protein kinase family protein | 124 | 7e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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