RadishBase

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Information for unigene UN38986

FASTA Sequence

Unigene ID: UN38986	Length: 1208		SNP
CAATGTGATTCCCGAGGTCTTATATGTTAAAATATGGGGAACTGACTTGGGTCGGTTTAGGAGTTTTGGAATATTGATTTCATCTT CTACTCTAAAAAGTCTAAGATAAAACAGAGTACTGCAACATTTGATAATAATCTCTTAAAAAACGGTTTAGTAAAAAAAAGTAAAA AACCAAACCAGTTTTCTACTCTAATTTTTGTCGAGCTTGGTGAGAAGGACTTGTTGAGGAAGGAGAGTGTAATCGATGTGAAGATC CTCCAACATTTTCTTAATCGCCAAAGACTGCTCGGTTCTTCTGATATTCCTCTCTCTGTATTCCTGAAACGTGATGGTGTGGTTGC TGTATAGAGCCATCTTCAGCTTGTTCATGTTCTCTATCTCCTTAACCACCACCGTGTGTATCGGTGACCAATGCTGCGGGTTCTGC TCCAAGTACTCAGCGATTCTTTCTTTGAGATGTGCAATCTTAGAGACTGGTGTTGAAAATGCGATAGAGAACTCCACAGTTTCTCC CATATCTGGACTTCTGAAGTAGTTGCTTATCGGTTTCGTGGCCAAAACACTGTTCGGATAATACACTTTCTCGTTGTCGAGTTTCA AGAACACCGTCGTTAACAGATTCATTTCTTCAACCAGCATCGGGACACCGTCGACAACGCAGCGATCACCGACATCAAAAGGATGC ATGACGAAGACAAACACAATGGACTCAAAGAGGTTCTTGCAAGTGCTTCCGATTATAAAAGCAAGAGCAACGAGTTGAGTGGAGAA GAACAGCAAAACTTTGGTCGTTGCTACTTCTAGTAGCAGCAGCCAAATGACGATCGTAATAACGATCAAGATCGCTGTCACGAGTT TGTTTAACTGCTTAACCGCTGTTTTTGTGTCGTTTAAGGAATGTGCTAGAGCTTTCCTGCTAGTGTACACCTTAACCACCCATTCT GTGAAAGCTTTTCTAGTGATTCTCCCGGTCTCAGCAGCACCGTCAAACAAAGGGAACACGAGATCAACCTCTTCTTTAATCATGAA CCTAAGCAGGTCTTCTTCCTCTATGTAGCTGCAGAGAGGCTGAGCGACATTTCTAAAGACATGGTAAGCAGCAGCCAAAGCCTCCA TCTCACTAGTAATCTCTCCTTTCTCAGCCTGCTCTTTCCCATCACCTAAGCCGTCTCATCCAACGTGTCAGAGATCGTAGAGAGAC CAGC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_196769 mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana]	1486	2e-162
XP_002873549 mechanosensitive ion channel domain-containing protein [Arabidopsis lyrata subsp. lyrata]	1479	1e-161
BAK61858 mechanosensitive ion channel domain-containing protein [Citrus unshiu]	1150	1e-123
BAK61859 mechanosensitive ion channel domain-containing protein [Citrus unshiu]	1150	1e-123
CAN70429 hypothetical protein VITISV_037531 [Vitis vinifera]	1137	5e-122

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LYG9 Uncharacterized protein At5g12080	1486	7e-164
Q9SYM1 Uncharacterized mscS family protein At1g78610	779	7e-082
O14050 Uncharacterized mscS family protein C2C4.17c	298	4e-026
O74839 Uncharacterized mscS family protein C1183.11	274	2e-023

TrEMBL top hits (Blast detail)	Score	e value
C0Z2U6 AT5G12080 protein	1486	1e-162
A5BQH6 Putative uncharacterized protein	1137	3e-122
B9RQV1 Putative uncharacterized protein	1113	2e-119
Q84M97 At5g19520	1104	2e-118
B9MSX4 Predicted protein (Fragment)	1022	7e-109

Arabidopsis top hits (Blast detail)	Score	e value
AT5G12080.1 MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10); mechanically-gated ion channel	1486	6e-165
AT5G12080.2 MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10); mechanically-gated ion channel	1486	6e-165
AT5G12080.3 MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10); mechanically-gated ion channel	1486	6e-165
AT5G19520.1 MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9); mechanically-gated ion channel	1104	1e-120
AT3G14810.1 MSL5 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 5)	793	1e-084

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	4			57%


11	3			43%

Unigene Members	Member information