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Information for unigene UN39085
| FASTA Sequence |
| Unigene ID: UN39085 | Length: 1008 |
| SNP | GGATTTTCTTACGGGACCCTTTTCTTAGGAGAGGAGAAGTTCGTGGAAACGGCACTGACGAACGAGATCTAGCACTTTCACGGATC
GATCGAAGAAGAAGAAAGATGAACATTTTCAGATTAGCAGGTGATATGACTCACCTGGCCAGTGTCCTCGTCTTGCTCCTCAAGAT
CCACACCATCAAATCCTGCGCTGGTGTGTCATTGAAGACTCAAGAGCTCTACGCCATTGTATTCGCGACGCGTTATCTGGATATTT
TCACGAGCTTTGTCTCCGTCTACAACACCTTCATGAAGTTGGTCTTCTTAGGAAGCTCCTTCTCCATTGTTTGGTACATGAGGTAT
CACAAGGCCGTCCAAAGGACTTACGACAGGGAGCAAGATACCTTTCGTCATTGGTTCCTTGTCCTTCCTTGCCTTCTCTTGGCTCT
TCTCATTCACGAAAAGTTCACCTTTCTTGAGGTACTGTGGACGTTTTCGTTGTACTTGGAGGCTGTTGCTATATTACCTCAGCTTG
TCTTGCTTCAAAGGACTAGAAATATCGATAACTTGACCGGCCAATACATATTCCTCCTTGGTGGGTACAGGGGATTGTACATCTTA
AACTGGATCTACCGTTACTTCACTGAGCCACACTTCGTTCACTGGATAACATGGATCGCGGGGTTTGTTCAGACATTGCTCTATGC
CGACTTCTTCTATTATTATTTCCTAAGCTGGAAGAACAACAAAAAGCTCCAGTTGCCAGCTTAATCTCTGGATTTTCGATGCTCGG
AAACCCTACCGATTCAGTTTGGTGCCTGGATACAATATCTGCTGGAAAGTTTACCAGTTTACTCTGTTGTTAGTTAATGGAGGAGA
CGAGCATAGATTTTATGTAAACTCCAGAAATTTAACTTGTTGTTACACATTTTTGAACTTTTTCGTGTCTCAGCTTTTTGTTCGAG
TAAGTGTTACTAAAATATTCCGACTGGACAAATCTTGCAAGTATGACTAGTCTACGTTTCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002883569 hypothetical protein ARALYDRAFT_480012 [Arabidopsis lyrata subsp. lyrata] | 1123 | 1e-120 |
| AAM64352 ER lumen retaining receptor (HDEL receptor), putative [Arabidopsis thaliana] | 1116 | 1e-119 |
| NP_566758 ER lumen protein retaining receptor [Arabidopsis thaliana] | 1108 | 8e-119 |
| XP_002863780 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1084 | 5e-116 |
| XP_002863175 hypothetical protein ARALYDRAFT_333020 [Arabidopsis lyrata subsp. lyrata] | 1080 | 1e-115 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9ZTN2 ER lumen protein retaining receptor | 1015 | 2e-109 |
| P35402 ER lumen protein retaining receptor | 831 | 5e-088 |
| O76767 ER lumen protein retaining receptor | 592 | 2e-060 |
| Q5XHA2 ER lumen protein retaining receptor 1 | 585 | 2e-059 |
| Q68ES4 ER lumen protein retaining receptor 1-B | 567 | 2e-057 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LD09 ER lumen protein retaining receptor | 1116 | 7e-120 |
| Q8VWI1 ER lumen protein retaining receptor | 1108 | 6e-119 |
| C6TCM4 ER lumen protein retaining receptor | 1038 | 7e-111 |
| C6T4N9 ER lumen protein retaining receptor | 1037 | 1e-110 |
| A9P883 ER lumen protein retaining receptor | 1004 | 6e-107 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G25040.1 ER lumen protein retaining receptor, putative / HDEL receptor, putative | 1109 | 2e-121 |
| AT1G29330.1 ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2); KDEL sequence binding / receptor | 832 | 3e-089 |
| AT2G21190.1 ER lumen protein retaining receptor family protein | 271 | 4e-024 |
| AT1G19970.1 ER lumen protein retaining receptor family protein | 270 | 5e-024 |
| AT4G38790.1 ER lumen protein retaining receptor family protein | 255 | 3e-022 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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