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Information for unigene UN39088

FASTA Sequence
Unigene ID: UN39088Length: 851 SSR 
CTCTTTGATAACTTAAATTTAAGGAAAAACTATAAAATAGTAACACATATTGGTATTTGCTTTGTATATAAACTAAAATGGAGAAG
AGAATTTGAAAACTTGGGAGGAATGAAATAGACATCTCATCATTGCAGTCGAGGAATTTACAACACTTTGACATAAAATGGATGAT
ATTTTGAGCCACAAGAGCACAAAGAAAGAGAGAGAGAGATGCATGTGTTAGATTCTTCTTTTGATTTTCCTTCATGAATATCTCTC
ACACTTCTTCCTTTGATTTAGCTGTTGCTCCCTAATATGTCTCTGTATGTGTCTTTGACCTTCTGAAACAGCACCTCCCTATCTGG
TTTGAAGATGATGTTCTTGTAAACGAACCACCCAGTGTAACCAATGCCTACAAGTTCAAAAACACCTGGAAACAATGGAAGCTTGT
CGATTGCCGAGATGAGGCCGGTAGATCCCCAAAGAGCCACCAAAGCAGCAAATGCGAGTGAACCAATTGCATATTTGTCCTCCACT
TTCTCCCACGCTTCTTGAGCTGTCTTGACTATTTCTGGCAACTCTGTAGTGTCAGCTTCGGCAGTGACCGAAGCTTCAACTTCGGT
AGCTCTCGTCAGAACGTTCCTAGCGATCTTCCGACAGTAAGCGGTGGACTGAAGCGGCTTAGGAGGAAGCATCGGAAGGGAAATAC
ACGACGGAGAAGAGAAGGAGGCTTGTCGAGTAGGAGAAGCTCTAGAATTAATGATAGTCGAAGAGGAAGAGATAGAAAGGGAAGCC
ATGGCTAAGGCGCTTCAATCACAGAAAACAACCCAACAAAATGTAAATTTGGTTTGAAACAAATCAGAGAAGCTTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002880267 hypothetical protein ARALYDRAFT_483848 [Arabidopsis lyrata subsp. lyrata]6481e-065
NP_566086 thylakoid membrane phosphoprotein [Arabidopsis thaliana]6193e-062
AAM63765 unknown [Arabidopsis thaliana]6159e-062
ABK95200 unknown [Populus trichocarpa]5566e-055
XP_002320236 predicted protein [Populus trichocarpa]5566e-055

Swiss-Prot top hits (Blast detail)Scoree value
Q8LCA1 Thylakoid membrane phosphoprotein 14 kDa, chloroplastic6191e-063
O04616 Uncharacterized protein At4g01150, chloroplastic2203e-017

TrEMBL top hits (Blast detail)Scoree value
A9PFP7 Putative uncharacterized protein5564e-055
B9I954 Predicted protein5564e-055
A5C9J2 Putative uncharacterized protein5252e-051
A9PJN6 Putative uncharacterized protein5152e-050
B9GRR8 Predicted protein5152e-050

Arabidopsis top hits (Blast detail)Scoree value
AT2G46820.1 PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding6191e-064
AT2G46820.2 PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding6191e-064
AT1G52220.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding (TAIR:AT2G46820.2); Has 203 Blast hits to 203 proteins in 35 species: Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).2462e-021
AT1G52220.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding (TAIR:AT2G46820.2); Has 203 Blast hits to 203 proteins in 35 species: Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).2346e-020
AT4G01150.1 unknown protein2202e-018

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
191  10%
 
116  60%
 
93  30%

Unigene MembersMember information