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Information for unigene UN39110
| FASTA Sequence |
| Unigene ID: UN39110 | Length: 1340 |
SSR | | GTTAGCTAAAACCGCCGCGAAATCCACCTCCAAAACGCAGCGTATCATGGCCTCGTCAGAGCCGCTTGACCTAGTCGTAACCGTCG
TCTCCGCCAAGCACCTGAAGAACGTCAACTGGCGTAACGGAGAGCTGAAACCCTACGTCGTTCTCTACCTCGACTCGGATCACCAC
CGCGTCTCCACTCACTCCGACGATTCCGTCAAACCGGTGTGGAACGAGCGGATCACTCTCCCTCTCGCCCGATCCGTCCACGAATC
GGTCCTCAACGTCGAGATTCTCCATTCCGACGCGGCGAAAACACTCGTCGGCTCGGTTAGGTTTCCTCTGGTTCGGTTAATCGACT
CGGAGGGAGGAGGAGGAGGAGCGATGGTTCCCGAATCGATCAGCTCGCTGGAGCTCCTCCGTCCCTCGGGTCGGATTCAAGGGAAG
ATCCGCTTGAAGCTCTCCATCAAGGAGCGACCGTTACCTCCTCCAACGCAGCGTCCTCAATCGCAGCCTAGAGATTACTATTCTAC
CCCTCAAGGAAACTATTATTACTCCCCAAGCCCTCCTCCTCCTCCTCCGGCTCCGATCACCTCCCCGTCTCCTCATCGTGACTACA
GAGAATTCTCACCTTCTCCTTACCCCTTCACCGATCACTACTACTCCGGATTCTATTACCCGCCTCCTCCGCCGCGTTCGATGTAC
GATCGCGCCTCCAATTACGGCCAGCCATCTGCTCCAGTCGATCGCGAGCCTCTTCCTTTAGCTCCTCCTCGGTTTCCACCACAGCC
GAGTGGACCACCATCAGCTCCCGTCGAAGCCTTTCAGGCGAACGAGTATAAGCCGCCGCAGCCGCAAGCTCCTCCTGTGGGCTCAA
GGTTGTCAAGTTACGGAGTGCCGAGCGGCCCGTCGGCTCCGGTGGATTACTCTCCTTATGATCACAGGCAGTTGCAGAAGGCGATG
GGCGGGTTGAGCTTGGAGGAAGAGAGAGCTGTTGCTGAGAGGTCTGAGAGTGACTTTGGAGCTAGGCCGAGCTTCAGCTATGGCCG
TGAGTATCGCCGTGAATGTTAGAAAAAGCTGTGGAATTTCTCAATGTGTGTGATGAAAAAAAGTTGTGGGGTTTCGCAAGTGTGTG
TGTGTGTGTGTGTGTGACGTTTCTAAGGCTCTGCTATCATCAGATTTTACCTTCGTGTTGGTGTTGAAAAGAATTATGAATTTGGT
GAATTTCCTCTCTGAAGATATGATATGTGTATTTATTGCTTCTTTTATGTATGTGTCTGAAGAACAAGAGGTGCAAAAGGTGTCAC
CTCTTCTGTTCCTTTGTACATGTTTCTAAAACAACTCTCTAGTTTCGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002892394 C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 1370 | 5e-149 |
| NP_563785 calcium-dependent lipid-binding domain [Arabidopsis thaliana] | 1362 | 4e-148 |
| XP_002314120 predicted protein [Populus trichocarpa] | 671 | 6e-068 |
| XP_002299823 predicted protein [Populus trichocarpa] | 591 | 1e-058 |
| XP_002279465 PREDICTED: hypothetical protein [Vitis vinifera] | 517 | 4e-050 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O65375 Leucine-rich repeat extensin-like protein 1 | 181 | 2e-012 |
| O48809 Leucine-rich repeat extensin-like protein 2 | 179 | 3e-012 |
| P13983 Extensin | 173 | 1e-011 |
| Q9T0K5 Leucine-rich repeat extensin-like protein 3 | 169 | 4e-011 |
| Q9FLQ7 Formin-like protein 20 | 149 | 9e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LNV0 F22G5.35 | 1362 | 3e-148 |
| A9PBN8 Predicted protein | 671 | 4e-068 |
| B9GIU4 Predicted protein (Fragment) | 591 | 8e-059 |
| B9SLI7 Putative uncharacterized protein | 503 | 1e-048 |
| C8YZB1 UPA18 | 460 | 1e-043 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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