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Information for unigene UN39126

FASTA Sequence
Unigene ID: UN39126Length: 1471 SSR 
ACACTTTTTTGTACTTATTTGCTCACCAAAACTTGTCTACTTTAACAAGCCTCCTAAATCTCAACAATTTCATTCACAAATCCATC
TGTAATATCGAGAGATCATCGTAGAAAAACCATAAAGTCACTTATTTAAAAGAAAGAAAAAAGAAGATGGATAATAACAATAACCA
GCAAACGTTTTGGCAGTTCAGCGATCAATTGAGAGTCCTCCAGACGCCGCACAATCTTTCCTTAAACGACTCCATCTGGAGCACCA
CCAACAAACGCACCGACGACCGCAGAAACTTGGACATCGCAGCCGCCTCCACCAACAAAAGCCCTATCGAATATCACAACAACAAG
GCTTCTTCCGACAACAACAACAACAACAAGAACGCTGCGAGCTGGAACACCTGGAAGTCTAGCTCCAACGGTTTCGGACCCATCGG
CTCAAAATCAACAACATCCACAAACGTCAATTTCAACCACACCGACGACAACCCCTGGAAATTCAACAACTCGGACGTCAACAACG
GCGATTTCAACAAGGGCATCTACTCCTCCCAGCCCAAGAGCTATGGCTTCAATTTCAAGAACAACAAGGGGATGCTCATCGATCAA
GATCATCATCATCATCAGATCCCCCAGAAAGGAGTAGGGAAGAAGAACAGGAAGAATCAGAAGAATAACAATAAGGAAGATGACAA
GAACACCAACGACAAGAGGTTTAAGACTCTTCCTCCCGCGGAGGCACTTCCGAGGAACGAGACCATCGGTGGTTACATCTTCGTGT
GCAACAACGACACCATGGAGGAGAATCTGAAGCGCCAGCTTTTCGGTTTGCCTCCGAGGTACAGGGACTCGGTCAGAGCCATCACT
CCCGGTCTTCCTCTCTTCCTCTACAACTACTCCACTCACCAGCTCCACGGTGTTTACCAGGCCGCTAGCTTCGGTGGGACTAACAT
TGAGCTCAACGCTTTCGAAGACAAGAAATGTCCTGGCGAGTCTCGGTTCCCTGCTCAGGTCAGGGCCATCACCAGGAAAGTTTGTT
TGCCTCTGGAAGAAGATTCTTTCCGTCCTATTCTCCACCACTACGATGGCCCTAAGTTCCGCCTCGAACTCACCGTCCCTGAGGTT
CTTTCTCTTTTGGACATTTTTGATGAGCAAAACCCTTGAATTCGTTTCCTTGGGATTAAAGACAACAAAAAACAACAATACGAAGA
CACAGACTAAAAGTTCACTTTTACCATATCCATAAAGAGATATTTACATATCATCATCCTACGTATATTATTAGTAATTGTCTCAA
GAAAATGATACTGGTTTATACACTTTTCGGGTTTATTTTCTTTAGTATTTTTACAAGAGAGGATGTGTTAAATTAGATATGAGACG
GGGCTTATATTTGCGTGGGTGAGATGACCAAAAAACAATCATGTCTTTCACTTGTGTTTGTGTATAAAGTAAATAAAGTTTCATGT
GTTATACCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002870594 hypothetical protein ARALYDRAFT_493778 [Arabidopsis lyrata subsp. lyrata]12121e-130
NP_568600 DCD (Development and Cell Death) domain protein [Arabidopsis thaliana]9602e-101
BAB08438 unnamed protein product [Arabidopsis thaliana]8957e-094
XP_002518847 n-rich protein, putative [Ricinus communis]8204e-085
XP_002266388 PREDICTED: similar to B2 protein [Vitis vinifera]7926e-082

Swiss-Prot top hits (Blast detail)Scoree value
P37707 B2 protein7582e-079
Q6XHA7 Probable serine/threonine-protein kinase roco91623e-010
Q6S6W0 Glycoprotein gp21571e-009
Q02817 Mucin-21543e-009
Q54SZ6 Putative uncharacterized protein DDB_G02821331533e-009

TrEMBL top hits (Blast detail)Scoree value
Q8RXN8 Putative uncharacterized protein9601e-101
Q9FHX9 Genomic DNA, chromosome 5, P1 clone:MJC208955e-094
B9RYM8 N-rich protein, putative8202e-085
C6TAQ0 Putative uncharacterized protein7881e-081
Q5JK82 Os01g0550300 protein7729e-080

Arabidopsis top hits (Blast detail)Scoree value
AT5G42050.1 FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27090.1); Has 5084 Blast hits to 2870 proteins in 85 species: Archae - 0; Bacteria - 24; Metazoa - 270; Fungi - 58; Plants - 157; Viruses - 8; Other Eukaryotes - 4567 (source: NCBI BLink).12152e-133
AT3G27090.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42050.1); Has 642 Blast hits to 564 proteins in 35 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).6937e-073
AT5G61910.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32910.1); Has 4051 Blast hits to 2453 proteins in 312 species: Archae - 1; Bacteria - 477; Metazoa - 1792; Fungi - 482; Plants - 477; Viruses - 8; Other Eukaryotes - 814 (source: NCBI BLink).2402e-020
AT5G61910.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32910.1); Has 4051 Blast hits to 2453 proteins in 312 species: Archae - 1; Bacteria - 477; Metazoa - 1792; Fungi - 482; Plants - 477; Viruses - 8; Other Eukaryotes - 814 (source: NCBI BLink).2402e-020
AT5G61910.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32910.1); Has 4051 Blast hits to 2448 proteins in 312 species: Archae - 1; Bacteria - 479; Metazoa - 1786; Fungi - 481; Plants - 479; Viruses - 8; Other Eukaryotes - 817 (source: NCBI BLink).2402e-020

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
203  33%
 
192  22%
 
181  11%
 
211  11%
 
62  22%

Unigene MembersMember information