RadishBase

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Information for unigene UN39131

FASTA Sequence

Unigene ID: UN39131	Length: 953	SSR
TCACAGTTATATAATTAAAATCATAGACATACAAATCACAGTGCTGAAGCAGAGTATTTGAAACTCCAAAGACAAAGTCACTCTAA AAAAAAATCTGATTATAAAGCAGGCAAAAATTTTACAGACGAACGATGATAGTGTTTGGGATAATGCGAAGGCTCGAGGACTTTTG TGTGTGTGTGTGTGTTTAGTTGTTGTTCTAACAAGAGCATCCTCCTGATTGCTGTTGAGCCAAAGATGCATTTGCATTGGAAGATT TGAGATTGACATCAACCATGTCCTCTTGCTTTGTGGAAGACAGTGTTTCCATTCCTGGCAAAGCTGCTGCTATCTTACGGAAAAGC GCCTTAATGTTGAAGCCTGCTTTGGCACTGGTTTCGATAAACATTACATTAAGCTCACGAGCCTTAGCTTCTGCTTCCTCTATCGA CACTTGCCTTTTGTCCACAAGGTCGGTTTTATTTCCCACAAGTACAACAATGACATCACTACCACGCTCGGTCCTAACCTCATCGA TCCACTTAGTAGTGTTTAGGAAGGATTGCCTGCTTGCAACATCATAGACAATAACAGCAACAGAAGAGTCCCTAATGTAACTGGGA ATAAGACTCCTGAACCTCTCTTGCCCAGCTGTATCCCATAGCTGCAGCCTGACAGTTCGGTCTTCAAGGTACATTGTTTTCGATAG AAAATCAATACCAATCGTGGCCTGGTAAGTGTTGTCGAATTTGTCGTACATGAATCGAGTGATGATGCTCGTCTTTCCCACGGATT GATCTCCCAGAAACACCAGCTTATACTTGGCCAGCGCCGACACCGGAGCCATTATTCCTCCGGATTGGATCAAGCTAGCCGGAACG ATCTCAGATACGCCGAGAAAGGAGTTTTCAAATTACTGGGGACCCATACAAAGAAGACGAATGGGTCACTTATGTGAAATTATAAA CTTATTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_181989 Ras-related protein RABH1B [Arabidopsis thaliana]	1032	5e-110
XP_002526504 protein with unknown function [Ricinus communis]	994	1e-105
XP_002302484 predicted protein [Populus trichocarpa]	992	2e-105
XP_002266653 PREDICTED: hypothetical protein [Vitis vinifera]	988	6e-105
AAA74117 putative [Nicotiana tabacum]	985	1e-104

Swiss-Prot top hits (Blast detail)	Score	e value
O80501 Ras-related protein RABH1B	1032	2e-111
Q9SMR4 Ras-related protein RABH1C	803	8e-085
P20340 Ras-related protein Rab-6A	774	2e-081
P35279 Ras-related protein Rab-6A	774	2e-081
Q5RAV6 Ras-related protein Rab-6A	774	2e-081

TrEMBL top hits (Blast detail)	Score	e value
B9SKH4 Putative uncharacterized protein	994	9e-106
B9GP45 Predicted protein	992	1e-105
Q40525 Nt-rab6 protein	985	9e-105
Q8H4Q9 GTP-binding protein Rab6	973	2e-103
A5BUZ6 Putative uncharacterized protein	970	5e-103

Arabidopsis top hits (Blast detail)	Score	e value
AT2G44610.1 RAB6A; GTP binding / protein binding	1033	1e-112
AT5G10260.1 AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding	911	2e-098
AT2G22290.1 ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D); GTP binding	870	1e-093
AT4G39890.1 AtRABH1c (Arabidopsis Rab GTPase homolog H1c); GTP binding / protein binding	804	5e-086
AT5G64990.1 AtRABH1a (Arabidopsis Rab GTPase homolog H1a); GTP binding	749	1e-079

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	2			33%


10	2			33%


12	2			33%

Unigene Members	Member information