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Information for unigene UN39280
| FASTA Sequence |
| Unigene ID: UN39280 | Length: 1558 |
SSR | | CGGCACGAGGCTCTCTCTCTCTCTCCTTTACAAAGCCTCAATCTTCGCTCTCCCTTCGCCGCGGTTTAGATCCGAGTTTGGGAGAA
ACAGCCTCCCTAAGTTAAACAAAAAAGCACTCTACTTCAGTTTCCAATCTTTTTCTCTCCAGTCATGGCAGGATCCGCACCCGAAG
GCACACAGTTTGATGCACGTCAGTTCGACCAGAAGTTGAACGATGTCCTTGAGGGACAGGATGAGTTCTTCACCTCTTACGATGAG
GTTCACGACAGCTTTGACGCCATGGGTCTTCAAGAAAATCTCCTCAGGGGTATCTACGCTTATGGTTTTGAGAAGCCCTCTGCGAT
TCAGCAAAGAGGAATCGTCCCTTTCTGCAAGGGCCTCGACGTGATCCAACAGGCCCAGTCCGGTACCGGCAAAACCGCAACGTTCT
GCTCCGGCGTCCTTCAGCAGCTGGACTTCACCATCGTCCAGTGCCAGGCCCTCGTCCTCGCACCAACCAGAGAGCTCGCCCAGCAG
ATTGAAAAAGTCATGAGAGCACTCGGCGACTACCTCGGCGTCAAGGTCCACGCCTGCGTCGGCGGAACCAGCGTCCGTGAGGACCA
GCGTATCCTCCAGGCCGGCGTCCACGTCGTCGTGGGAACCCCTGGACGCGTCTTCGACATGCTCAAGAGACAGTCCCTCCGCGCGG
ACAACATCAAGATGTTCGTCCTCGACGAGGCCGACGAGATGCTCTCACGCGGTTTCAAGGACCAGATCTACGACATCTTCCAGCTC
CTCCCTCCCAAGATCCAGGTCGGCGTCTTCTCGGCGACCATGCCTCCCGAAGCTCTAGAGATTACGAGGAAGTTCATGAGCAAGCC
GGTGAGGATCCTGGTGAAGCGAGACGAGCTCACACTGGAAGGTATCAAGCAGTTCTACGTCAACGTGGAGAAGGAAGACTGGAAGC
TCGAGACGCTCTGCGACCTCTACGAGACGCTAGCCATCACTCAGAGCGTCATCTTCGTGAACACCAGGAGGAAGGTTGACTGGCTC
ACCGATAAAATGAGGGGCCGGGACCACACTGTCTCGGCCACTCACGGGGACATGGACCAGAACACGAGAGACATCATCATGAGGGA
GTTCAGGTCCGGCTCCTCGCGCGTGCTCATCACGACCGATCTGTTGGCTCGTGGTATCGATGTGCAGCAGGTGTCGCTGGTGATCA
ACTACGATCTGCCGACTCAGCCGGAGAATTACCTCCACCGTATTGGAAGGAGTGGGAGGTTTGGGAGGAAAGGTGTGGCGATTAAC
TTTGTGACCAAGGATGATGAGAGGATGTTGTTTGATATTCAGAAGTTTTACAATGTCGTTGTTGAGGAGCTTCCTTCTAACGTTGC
TGATCTCCTGTGAAGAGGGAGAGGTTCTCGCTGTTCTAATCACACCGGAGAAGAAAAGGTTTTCTTTTGTTTTTTGAAAGGCACAA
CGACTACTCTTTGATTTGATTTTGACACTTCTCTCTCTCTCTTTACGAACATATCTCTCTCTATCTCTCTTTTCCGACCATTTTTT
ATTTAAGATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002884997 predicted protein [Arabidopsis lyrata subsp. lyrata] | 2074 | 1e-230 |
| NP_566469 translational initiation factor 4A-1 [Arabidopsis thaliana] | 2073 | 2e-230 |
| AAL91176 eukaryotic translation initiation factor [Arabidopsis thaliana] | 2070 | 4e-230 |
| AAM63951 Eukaryotic initiation factor 4A, putative [Arabidopsis thaliana] | 2068 | 7e-230 |
| BAE98559 eukaryotic protein synthesis initiation factor 4A [Arabidopsis thaliana] | 2063 | 3e-229 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P41376 Eukaryotic initiation factor 4A-1 | 2073 | 8e-232 |
| P41377 Eukaryotic initiation factor 4A-2 | 2034 | 3e-227 |
| P41379 Eukaryotic initiation factor 4A-2 | 1991 | 3e-222 |
| Q40467 Eukaryotic initiation factor 4A-14 | 1987 | 8e-222 |
| Q40465 Eukaryotic initiation factor 4A-11 | 1986 | 1e-221 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9S5V7 Dead box ATP-dependent RNA helicase, putative | 1973 | 5e-219 |
| A9P851 Predicted protein | 1972 | 7e-219 |
| Q6T8C6 Initiation factor eIF4A-15 | 1972 | 7e-219 |
| A9PD17 Predicted protein | 1967 | 3e-218 |
| B9HDC5 Predicted protein | 1966 | 3e-218 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G13920.1 EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor | 2074 | 5e-233 |
| AT1G54270.1 EIF4A-2; ATP-dependent helicase/ translation initiation factor | 2035 | 2e-228 |
| AT3G13920.2 EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor | 1963 | 4e-220 |
| AT3G13920.3 EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor | 1959 | 1e-219 |
| AT1G72730.1 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative | 1909 | 7e-214 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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