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Information for unigene UN39347
| FASTA Sequence |
| Unigene ID: UN39347 | Length: 1078 |
SSR | | GTATAATGCTGCATCTCATTCAAAGGACAAAGCAGTAACGCAGCACATTACCGAAAAAAACAACGTGTCACAAACGATTCAAAAAT
TACAAAACGATAAAATATAAAAATATATGTAAACAAGTCAAATGTTGATAACATTCACGACGACGATGATTCTTAAAGTTCCGCTC
CAGTTTGATTTTGACTCTGGTGATCCTTTTATATAATATACATCGCATGTTCTTGTTTATCATCAATGCATACACAGATCTGCTCA
AACCAAGTCAATAACCTTAGAGGGCCATCTCAGCCTGTAATGCAGCGAGTTCTTCTTCCTCGGCTGTCCGTTTAGGAGCAACAGGA
CGGACTGGTTGACGCCCTGGAACAGAAGGCATTGGTGTTGGCTGAAGAAGTTGTTCTTCAAGCTCTGCACCTTCTAATTCTTCAAG
CTCAGCTTCGAGCTCATCCTCATCGAAGTCAGCAGCCGCACCGATTGGAGTAGACAAAGCTTCTTGGATCTGTTTCATGTTCTCTG
TCTGCTCATTGATCTCGTCCATGGTCTTGTCTACATCATCTATGTTCGTAGCTTTCTGCATAGCTTTCATAGCAGAAGCTCCACTC
CTCAACGCATCAACAGTTTCGGTTGTTGCTTTTGCGCCTTCTAACATAATCATTTGATCATGAATACGGAGCTGGAAGTTGCCAAG
CTGTTCAACTTGTTGCTCATACAACCTCTTCCTCTTCAAGCACTGAATAGCCGCGCGTTTGTTTTTAGAACGAGTGTATTCTTTGG
CTTTCTCGACCTCTTGTCCAGCTTTCTTTAACAGCACTTTCTCCTTCTTCTCTAGCATCTCAAGCGTCTCGTTGAGCTTGTCTAAT
GTCTGGAGAGCATTACCCTCATGCTTTGGTTTCCCAAATAGCCGATTCATCATCTTTTTCCTTCTTCCTTTATTTCACCCTCTTCT
CCCCAAATCGATTGCTAGATCCCTGGGGAAAAAATCTGGATTTCGATTAAAAATTGGAATCTTCGAAAGAGAGGACTTTGTCTGGT
CTTCCTTCCTTCCTTCCTTCCTTCCGCGAAATATTATTAAGCAGCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_194645 vacuolar protein sorting-associated protein 32-2 [Arabidopsis thaliana] | 935 | 1e-098 |
| AAM66053 copia-like retroelement pol polyprotein [Arabidopsis thaliana] | 930 | 4e-098 |
| XP_002514179 Charged multivesicular body protein 4b, putative [Ricinus communis] | 913 | 4e-096 |
| XP_002283066 PREDICTED: hypothetical protein [Vitis vinifera] | 901 | 9e-095 |
| XP_002275998 PREDICTED: hypothetical protein [Vitis vinifera] | 898 | 2e-094 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SZE4 Vacuolar protein sorting-associated protein 32 homolog 2 | 935 | 5e-100 |
| O82197 Vacuolar protein sorting-associated protein 32 homolog 1 | 864 | 8e-092 |
| Q7ZVC4 Charged multivesicular body protein 4b | 357 | 5e-033 |
| Q5XGW6 Charged multivesicular body protein 4b | 352 | 2e-032 |
| Q6GL11 Charged multivesicular body protein 4b | 350 | 3e-032 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RKD5 Charged multivesicular body protein 4b, putative | 913 | 3e-096 |
| A5C1M4 Putative uncharacterized protein | 901 | 6e-095 |
| A5BR24 Putative uncharacterized protein | 898 | 1e-094 |
| A5B271 Putative uncharacterized protein | 844 | 3e-088 |
| A2YZ57 Putative uncharacterized protein | 831 | 8e-087 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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