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Information for unigene UN39367

FASTA Sequence
Unigene ID: UN39367Length: 1114 SSR 
GGCCCGTCTCTGAGAAGAGTGTAAAAAGGAAGCGCCTTTTTTTTTTGCCTCTGTCTTAATTTCAGAGAGGAGACAAAACAAAAGCG
ATGTCGCAACTCTTATCTTCTCCTCTGATGGCGGCAAGTTACAATCCCTTTGCTAGCCCTCGGTTTCTCTCTTCGTCTTCTTCAGT
ACTCGTCCCCGGCGGCGGCGGCGGTCTCGCCGTGAAATGGCATGGACTAGCTTCGAAACCGGCGAGGACGGTGAATCTCTCGGTGA
AGTCGCGCCAGACGGATTACTTCGAGAAGCAGAGGTTCGGTGACTCATCATCTTCTTCACAGAACGGTGAAGGAGGACCTGCTAGG
TTTTACGTGGGTCATTCGATATACAAAGGGAAAGCTGCGTTAACAGTGGAGCCAAGAGCACCGGAGTTTGTGTCTTTAGACTCTGG
AGCTTTCAAGTTGTCCAAAGACGGGTTTCTACTGCTTCAGTTTGCTCCTGCAGCTGGTGTAAGGCAATACGATTGGAGCAAGAAAC
AGGTGTTCTCATTGTCGGTTTCAGAGATTGGAACTCTAGTTAGCCTAGGCCCAAGGGAGTCTTGTGAGTTCTTCCATGATCCTAAC
AAGGGGAAAAGTGATGAGGGAAAGGTGAGGAAAGTGTTGAAAGTTGAGCCTCTCCCTGATGGTTCTGGACACTTCTTTAACCTAAG
TGTTCAAAACAAGCTGTTGAATGTTGATGAGAGCATTTACATACCAATCACTAGAGCAGAGTTTACTGTTCTGGTCTCTGCTTTCA
ATTTCGTCTTGCCTTACCTTATAGGCTGGCACGCATTTGCGAACTCCATCAAACCAGAAGAGACAATCCGTACGAACAACGCTTCA
TCTAACTACGGAGGAGACTATGAATGGAATAGATAGATGAATTTTCTAAAGGCCCATAGGAGAATAATCTTATCCTTGTTTGCGGA
TAGTGTTCTTGAAGAATGTTCTTTGTTCGTAGCTGGCAGAATAGACTAAAAGTAGTGCTTTTTTTGACCAAACGTGGAAAGTGAAC
AACAAAATCCGTTGTATTGTATCTCAAAACATCAGTTTATTGTCTTGTCTTATCTTATTTTAGCTGTTTTTTTATATTAGAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_172893 ssDNA-binding transcriptional regulator [Arabidopsis thaliana]11133e-119
XP_002892804 ATWHY1/PTAC1 [Arabidopsis lyrata subsp. lyrata]10991e-117
NP_001077872 ssDNA-binding transcriptional regulator [Arabidopsis thaliana]10066e-107
XP_002875143 ATWHY3/PTAC11 [Arabidopsis lyrata subsp. lyrata]10058e-107
NP_178377 ssDNA-binding transcriptional regulator [Arabidopsis thaliana]9985e-106

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9M9S3 F14L17.18 protein11132e-119
A8MR64 Uncharacterized protein At2g02740.210064e-107
Q66GR6 At2g0274010021e-106
Q0WLJ4 Putative uncharacterized protein At2g027409993e-106
B9S2A9 Putative uncharacterized protein8353e-087

Arabidopsis top hits (Blast detail)Scoree value
AT1G14410.1 WHY1 (WHIRLY 1); DNA binding / telomeric DNA binding11147e-122
AT2G02740.2 WHY3 (WHIRLY 3); DNA binding10117e-110
AT2G02740.1 WHY3 (WHIRLY 3); DNA binding10036e-109
AT1G71260.1 ATWHY2 (A. THALIANA WHIRLY 2); DNA binding4426e-044

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
83  21%
 
66  43%
 
124  29%
 
101  7%

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