Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN39443

FASTA Sequence
Unigene ID: UN39443Length: 751 SSR 
TTTTTTTATGCAAATCGAGTATATTGAATGAAGAGAACGAGCAGCCTAGTTAACCGCAAAACTTGCATTTTCCAAACAAATCTCAA
GACCTGTCTACTAACAAGTTTTGTATTCAATATTCAAAAACAACGAAGAAGACAAAAGAGGAACAGAAAGTGGACACAAGAAAAAT
AAAATGGGTTTTCTTTTGGAAATGGGAAACATATGGTTGAGAGATCCGACTTTTCCTGATTTTAGTTAGATTCAATATGCTTCTTG
ACGATGTTGAGTGCAGTTGTCTCCTCACCGTAATCCTTGACTACAAGGCACGAGCACCCAACAACCTTCCTTGCATTGCCCTCTGA
ATCAATCTTGCAAAGACCAGCCCACTCCCCGAGAGTTTTAGCGCTTGGAACAGTAAGCAAGTTGATGCTGTGATCAGCGCAAAGAG
CTTTCACCAGCTTGACGTAATCAGGCTGGTTGCAATCTTCGGCCAAGACACAGAGCTGAGCAGAACGCTTCTCGATAAGCTTAGCG
CTTTCATGGAGGCCACGAACCACACCACCGTGAGCACGAGCTTTCCTTAGCGTCAACTCCAATGCAGTCAACAGATCCATGTCCTC
TGGAATAGCAGCTGCCTCAGAAACCGGAGGAACAACAGCAGGAGCAGCAGCAGCTTCATCACCAGACATGTTGAATTGCCTTGGAA
ACTAAGTAAAAGCAAAAGCTCCTTTTTAAATAGAGAGAGAGAGGCGCTACAAGGACGAGGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_180766 40S ribosomal protein S12-2 [Arabidopsis thaliana]6677e-068
NP_173045 40S ribosomal protein S12-1 [Arabidopsis thaliana]6238e-063
XP_002887897 predicted protein [Arabidopsis lyrata subsp. lyrata]6192e-062
XP_002890138 40S ribosomal protein S12 [Arabidopsis lyrata subsp. lyrata]5897e-059
XP_002881214 40S ribosomal protein S12 [Arabidopsis lyrata subsp. lyrata]5816e-058

Swiss-Prot top hits (Blast detail)Scoree value
Q9SKZ3 40S ribosomal protein S12-26673e-069
Q9S9P1 40S ribosomal protein S12-16234e-064
Q9XHS0 40S ribosomal protein S125114e-051
Q76I81 40S ribosomal protein S123725e-035
P84175 40S ribosomal protein S123725e-035

TrEMBL top hits (Blast detail)Scoree value
B9GT02 40S ribosomal protein S125716e-057
A9P9K3 40S ribosomal protein S125554e-055
A9PDC2 40S ribosomal protein S125554e-055
B9S6H9 40S ribosomal protein S125554e-055
A9PJY6 40S ribosomal protein S125492e-054

Arabidopsis top hits (Blast detail)Scoree value
AT2G32060.1 40S ribosomal protein S12 (RPS12C)6736e-071
AT2G32060.3 40S ribosomal protein S12 (RPS12C)6736e-071
AT2G32060.2 40S ribosomal protein S12 (RPS12C)6736e-071
AT1G15930.2 40S ribosomal protein S12 (RPS12A)6243e-065
AT1G15930.1 40S ribosomal protein S12 (RPS12A)6243e-065

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  100%

Unigene MembersMember information