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Information for unigene UN39447

FASTA Sequence
Unigene ID: UN39447Length: 717  SNP
TTTTTGCTTACACAACCAGAGAGCGAGAGAGCTAAAATGACGAGCGTGAGTGGGTGTGGTTCGGTGAGCCTCTTAACTAACCGCAA
TGCGTTCTTAGGAAGCGGACTGCAACACCGTGCCGTTTTTCTGAAACCATGGTCGCCTCCGTCGCTGCTCAAGTCTGGGTCCATGC
TCGTGGTTGAAGCCAAAACCAAAACCAGCAGCGAAGACAGAATCGCCCGCCACTCTCGCATCCGTAAGAAGGTTAACGGTACAACG
GAGAGGCCAAGGATGTGTGTGTTTCGCTCAAACAAGCATCTCTATGTGCAAGTGATTGATGACACCAAGATGCACACTTTAGCTTC
AGCTTCCACCAAGCAGAAACCCATCTCTGAGGAGTTTGACTACACCTCTGGACCTACCATTGAGGTGGCGAAGAAAGTAGGGGAAG
TGATAGCGAAATCATGCTTGGAGAAAGGGATCACAAAGGTGGCATTTGACCGTGGTGGTTACCCTTACCATGGTCGCATTGAAGCT
CTTGCCGCTGCTGCTCGTGAACACGGTCTTCAGTTTTAACTCTTGTTTTTCTTATCTCCTTTTGTTTCTGCGGAACAGAGAGTATG
ATTTGTAGACTATATCCATTGAAATGTTGAAGTTTCCCTTTATAAAGAGTGTTCTTTGTTGATAACCAAAAGATTCTTGAGTGGCG
TTCTCTGAATGTGAAAAGAGCTAATCATC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_175268 50S ribosomal protein L18 [Arabidopsis thaliana]7975e-083
XP_002891426 ribosomal protein L18 family protein [Arabidopsis lyrata subsp. lyrata]7967e-083
XP_002314349 predicted protein [Populus trichocarpa]5718e-057
XP_002509912 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]5663e-056
XP_002334329 predicted protein [Populus trichocarpa]5531e-054

Swiss-Prot top hits (Blast detail)Scoree value
Q9SX68 50S ribosomal protein L18, chloroplastic8072e-085
Q8SAY0 50S ribosomal protein L18, chloroplastic4747e-047
P09415 50S ribosomal protein L183619e-034
Q5L3S3 50S ribosomal protein L183619e-034
C5D3T3 50S ribosomal protein L183573e-033

TrEMBL top hits (Blast detail)Scoree value
Q0WWC5 Putative uncharacterized protein At1g483507974e-083
A9PGN8 Predicted protein5716e-057
B9RCM8 50S ribosomal protein L18, chloroplast, putative5662e-056
B9NGE4 Predicted protein5537e-055
A5BNB6 Putative uncharacterized protein5402e-053

Arabidopsis top hits (Blast detail)Scoree value
AT1G48350.1 ribosomal protein L18 family protein8081e-086
AT3G17626.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ribosomal protein L18 family protein (TAIR:AT1G48350.1); Has 336 Blast hits to 336 proteins in 121 species: Archae - 0; Bacteria - 241; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).1493e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
103  33%
 
84  44%
 
122  22%

Unigene MembersMember information