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Information for unigene UN39447
| FASTA Sequence |
| Unigene ID: UN39447 | Length: 717 |
| SNP | TTTTTGCTTACACAACCAGAGAGCGAGAGAGCTAAAATGACGAGCGTGAGTGGGTGTGGTTCGGTGAGCCTCTTAACTAACCGCAA
TGCGTTCTTAGGAAGCGGACTGCAACACCGTGCCGTTTTTCTGAAACCATGGTCGCCTCCGTCGCTGCTCAAGTCTGGGTCCATGC
TCGTGGTTGAAGCCAAAACCAAAACCAGCAGCGAAGACAGAATCGCCCGCCACTCTCGCATCCGTAAGAAGGTTAACGGTACAACG
GAGAGGCCAAGGATGTGTGTGTTTCGCTCAAACAAGCATCTCTATGTGCAAGTGATTGATGACACCAAGATGCACACTTTAGCTTC
AGCTTCCACCAAGCAGAAACCCATCTCTGAGGAGTTTGACTACACCTCTGGACCTACCATTGAGGTGGCGAAGAAAGTAGGGGAAG
TGATAGCGAAATCATGCTTGGAGAAAGGGATCACAAAGGTGGCATTTGACCGTGGTGGTTACCCTTACCATGGTCGCATTGAAGCT
CTTGCCGCTGCTGCTCGTGAACACGGTCTTCAGTTTTAACTCTTGTTTTTCTTATCTCCTTTTGTTTCTGCGGAACAGAGAGTATG
ATTTGTAGACTATATCCATTGAAATGTTGAAGTTTCCCTTTATAAAGAGTGTTCTTTGTTGATAACCAAAAGATTCTTGAGTGGCG
TTCTCTGAATGTGAAAAGAGCTAATCATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_175268 50S ribosomal protein L18 [Arabidopsis thaliana] | 797 | 5e-083 |
| XP_002891426 ribosomal protein L18 family protein [Arabidopsis lyrata subsp. lyrata] | 796 | 7e-083 |
| XP_002314349 predicted protein [Populus trichocarpa] | 571 | 8e-057 |
| XP_002509912 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis] | 566 | 3e-056 |
| XP_002334329 predicted protein [Populus trichocarpa] | 553 | 1e-054 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SX68 50S ribosomal protein L18, chloroplastic | 807 | 2e-085 |
| Q8SAY0 50S ribosomal protein L18, chloroplastic | 474 | 7e-047 |
| P09415 50S ribosomal protein L18 | 361 | 9e-034 |
| Q5L3S3 50S ribosomal protein L18 | 361 | 9e-034 |
| C5D3T3 50S ribosomal protein L18 | 357 | 3e-033 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WWC5 Putative uncharacterized protein At1g48350 | 797 | 4e-083 |
| A9PGN8 Predicted protein | 571 | 6e-057 |
| B9RCM8 50S ribosomal protein L18, chloroplast, putative | 566 | 2e-056 |
| B9NGE4 Predicted protein | 553 | 7e-055 |
| A5BNB6 Putative uncharacterized protein | 540 | 2e-053 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G48350.1 ribosomal protein L18 family protein | 808 | 1e-086 |
| AT3G17626.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ribosomal protein L18 family protein (TAIR:AT1G48350.1); Has 336 Blast hits to 336 proteins in 121 species: Archae - 0; Bacteria - 241; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | 149 | 3e-010 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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