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Information for unigene UN39486
| FASTA Sequence |
| Unigene ID: UN39486 | Length: 808 |
SSR | SNP | GGATCGCTCGTGAAATCTCCAGAGAAAATGATCCGATTCATATTATTGCAGAACAGGCAAGGGAAGACTCGGGGAGAGAGAGAGAG
ATCTGAATCGAAAGAAATTGGGTTACATCTCCGGTCTGATCGCTCGTGAAATCTCCAGAGAATATGATCCGATTCATATTATTGCA
GAACAGGCAAGGGAAGACTCGTCTTGCCAAGTACTATGTCCCTCTCGAAGAATCCGAGAAACACAAAGTCGAATACGAGGTTCATA
GGTTAGTGGTGAACCGCGACGCAAAATTCACCAATTTCGTTGAGTTTAGAACACACAAGGTGATATACAGGCGTTACGCTGGACTG
TTCTTCTCCGTGTGCGTGGATATAACGGACAATGAGTTGGCTTACCTTGAGTGCATCCATTTGTTTGTGGAGATTTTGGATCATTT
CTTCAGCAATGTCTGTGAGCTTGATCTCGTCTTCAACTTCCACAAGGTGTACTTGATACTTGATGAATTCATTCTTGCTGGAGAGC
TCCAAGAAACCAGTAAAAGGGCGATCATCGAGAGGATGTCAGAGCTCGAGAAGCTAGAGTGATATGATTGTTTCTCAAAAAGCTGG
GGTTATTGTTTAACATGTTTTGGTCATTCTTTTCCTTGGCGTGTCCAGAGATTTGATATTCTTTGTTGAGTTGAAGACGACAATGG
TGATGTTAAGATTATTTGTAAAAGGATATGAAACGATTCTGTTGAGTTCTCTATCCAAAATTTGCTTTATGTAAGATTTTCTTTCA
ACTAGTGAGGTTACTTGCTAGTTACCACAGCCAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002301979 predicted protein [Populus trichocarpa] | 721 | 4e-074 |
| NP_175219 AP-2 complex subunit sigma [Arabidopsis thaliana] | 718 | 9e-074 |
| NP_001066387 Os12g0207300 [Oryza sativa Japonica Group] | 716 | 2e-073 |
| XP_002449276 hypothetical protein SORBIDRAFT_05g007040 [Sorghum bicolor] | 715 | 2e-073 |
| XP_002306925 predicted protein [Populus trichocarpa] | 713 | 4e-073 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O50016 AP-2 complex subunit sigma-1 | 650 | 3e-067 |
| Q54H39 AP-2 complex subunit sigma | 523 | 2e-052 |
| Q7SAQ1 AP-2 complex subunit sigma | 523 | 2e-052 |
| Q4ICG5 AP-2 complex subunit sigma | 505 | 2e-050 |
| Q4WS49 AP-2 complex subunit sigma | 503 | 4e-050 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9GQV7 Predicted protein | 721 | 3e-074 |
| Q84WL9 At1g47830 | 718 | 6e-074 |
| C5YTM2 Putative uncharacterized protein Sb08g006500 | 716 | 1e-073 |
| Q2QW51 Clathrin coat assembly protein AP17, putative, expressed | 716 | 1e-073 |
| Q8W4U9 Clathrin assembly protein AP17-like protein | 716 | 1e-073 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G47830.1 clathrin coat assembly protein, putative | 719 | 3e-076 |
| AT2G17380.1 AP19; protein binding / protein transporter | 412 | 1e-040 |
| AT4G35410.2 clathrin adaptor complex small chain family protein | 412 | 1e-040 |
| AT4G35410.1 clathrin adaptor complex small chain family protein | 338 | 5e-032 |
| AT2G19790.1 clathrin adaptor complex small chain family protein | 327 | 9e-031 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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