RadishBase

| | | |

Information for unigene UN39512

FASTA Sequence

Unigene ID: UN39512	Length: 881	SSR
GGGGGAGGCCCTGTCCAAGAGAAAAAGAAGAATCCTCGTCTCTCGTTCGTGCACGCGAAGTAGACGAAGAAGAAGAAGAAGAAGAA GAGAAGCTGAATCGAGGAGTGGCGCATTTTAGCCGTCCGCATAACCGTCGCTGTCTCTCCGACTACATCTCGGTTCCCTTTCATCA TCGTCGGAATCGAATCGAATCGATGGCTGCTCCACCTGCTAGGGCCAGAGCTGATTATGATTATCTCATTAAGCTTCTTCTGATTG GAGATAGTGGTGTGGGTAAAAGTTGCCTACTTCTACGTTTCTCTGATGGATCCTTCACCACTAGCTTCATCACCACCATTGGCATT GACTTTAAGATCAGAACGATTGAGCTTGATGGGAAACGTATCAAGCTCCAGATTTGGGACACTGCTGGTCAAGAACGCTTCCGCAC TATCACCACTGCTTATTACCGTGGGGCAATGGGGATTTTGCTTGTCTATGATGTCACAGACGAGTCTTCCTTCAACAACATTAGAA ACTGGATTCGTAATATCGAACAACATGCTTCTGATAATGTTAACAAGATCTTGGTTGGTAACAAGGCTGACATGGATGAAAGCAAG AGGGCTGTACCTACAGCAAAGGGTCAGGCTCTTGCTGATGAGTACGGAATTAAGTTCTTCGAAACAAGTGCTAAGACAAACCTAAG CGTGGAAGAAGTTTTCTTCTCGATAGGGAGGGACATCAAGCAGAGGCTTTCTGACACCGACTCCAGGGCTGAGCCTGCGACGATTA AGATAAGCCAGACAGACCAGGCAGCTGGTGCCGGGCAGCCACACAGAAGTCTGCATGCTGTGGAACTTAAAGAAGTGTAAATTGAG TTTAAGACGAGACAGACAGAC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_190192 Ras-related protein ARA-3 [Arabidopsis thaliana]	1038	9e-111
BAJ34629 unnamed protein product [Thellungiella halophila]	1032	4e-110
XP_002866353 hypothetical protein ARALYDRAFT_496120 [Arabidopsis lyrata subsp. lyrata]	1018	2e-108
NP_200792 Ras-related protein Rab-8A [Arabidopsis thaliana]	1017	2e-108
AAB17726 small GTP-binding protein rab [Brassica rapa subsp. campestris]	1006	4e-107

Swiss-Prot top hits (Blast detail)	Score	e value
P28186 Ras-related protein ARA-3	1038	4e-112
Q39433 Ras-related protein RAB1BV	939	1e-100
P20790 Ras-related protein Rab-8A	734	7e-077
P20791 Ras-related protein Rab-8B	728	3e-076
P36861 GTP-binding protein yptV2	698	1e-072

TrEMBL top hits (Blast detail)	Score	e value
Q9FJF1 Putative GTP-binding protein ara-3	1017	2e-108
Q96362 Small GTP-binding protein rab	1006	3e-107
A5C254 Putative uncharacterized protein	997	3e-106
B9GER9 Predicted protein	997	3e-106
B9T7S3 Putative uncharacterized protein	996	4e-106

Arabidopsis top hits (Blast detail)	Score	e value
AT3G46060.1 ATRAB8A; GTP binding	1038	4e-113
AT3G46060.2 ATRAB8A; GTP binding	1038	4e-113
AT3G46060.3 ATRAB8A; GTP binding	1038	4e-113
AT5G59840.1 Ras-related GTP-binding family protein	1017	1e-110
AT3G53610.1 ATRAB8; GTP binding	980	2e-106

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	1			33%


10	2			67%

Unigene Members	Member information