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Information for unigene UN39616

FASTA Sequence
Unigene ID: UN39616Length: 1508 SSR 
CGAGGCGATAACTCGTCCCGAGTCCTCTCGCTCCGACGGCGAATCCGTCTTCTCCCGCCGATGTCAGCATACAATAACAGAGTAAA
ATCCGTGATTCTGTAGATTCTCCACCCTCCAGGAGGTGAGTTTCTCATCCGATCTCTCTCGAATATCGAATCGAATAGAATATAGC
CCTCTCGGCCGTCGATTTTATGAAAAGATTCGTCATCATCGTAGGGTTAATGGTTGTGATCGAAATGGTTTCTAGAGCTGGCATTT
AGTTAGGGTTTTTCGAATTTGATTTCAATGGAACCAACTAGATTCGATCCCCTGTTGCCCTGCACTTGTATTTGCATGTTCAAATC
TCTTGGCAGGCAAAGAAGAAGAAGAAGGAAGATGAGTTTCGTATTCCGAGGAAGTAGAGGAGATTTAGAGAGCGGATTCTCTGGAT
TCATCCCCGAGAGACGAGCTATGCGTGTTCATGGAGCTCGACCTGTGAACTCTAACTCCCTCGCTTTTCTTGTCACTGTTCTTTTG
CTGTTTATGATTCTCAACTCCCATCAGATGCCTCCTAATTTCCTGCTCTGGCTTGTGCTTGGGGTGTTTTTGATGGCGACGACTCT
TAGGATGTATGCCACTTGCCAGCAACTTCAAGCTCAGGCTCAGGCTCATGTTGCCGCAGCTAGTGGCCTCTTCAGCCACACTGAGC
TCAGGCTGCATGTGCCTCCCTCCATTGCTCTTGCTACCAGAGGGCGTCTTCAAGGACTTAGGCTCCAGCTGGCTCTTCTTGATCGG
GAGTTTGATGACTTAGATTATGAAACTCTAAGAGCACTTGATTCTGATAATGTCCCCACAAACTCTATGAGCGAGGAAGAGATAAA
TGCACTTCCAGTACACAAGTACAAGGTCTTGGACCCTGAAAATGGTTCCTCTTTGACAAAGCAGGCATCAACCTCATCCTCAGCGG
AGAAGAAGCAAGATTCTGTCAGTGCGAGTAAAAAAGGAACGGAAGACGAGCTCACTTGTAGTGTTTGCCTCGAACAAGTTACTGTT
GGGGAGGTTGTTCGCACCCTACCTTGCTTGCATCAGTTTCATGCAGTCTGTATCGATCCATGGCTTAGACAGCAAGGAACATGTCC
TGTCTGTAAATTCAAGGCGCACTCAGGATGGCAAGAACAAGACGACGGGACAGATGATGATGATGATGATGATGACGAAGCCTCCG
TCATGGTTTGAGAGTTCGGTTTTCGGACACTTGTTATTAGGGGTGGGCACTTCGGTTATTTTATCGGTTCGGTTCCGGTTCGGTTC
GGTTTGGTTAATTCGGTTCAATGATTTATCCAACCAAAGTAAACCATAGTTAGTTCGGTTTGGATCGGTTTCGGTTCGGTTTGAAC
TCAGTTCGGTTTGAATTCGGTTCGGTTTTAAAACACAAACGCATGGTCATAAAATCATCGTGTTGACGATTATAAAAAACTAAATT
ATGTTGACTAGATTCAATATAAAACCCAAAAAAACTTTTGAAACAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002878037 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]13161e-142
NP_191112 E3 ubiquitin-protein ligase SDIR1 [Arabidopsis thaliana]12765e-138
CBI31650 unnamed protein product [Vitis vinifera]11287e-121
ADN34069 protein binding protein [Cucumis melo subsp. melo]11242e-120
XP_002283148 PREDICTED: hypothetical protein [Vitis vinifera]11181e-119

Swiss-Prot top hits (Blast detail)Scoree value
Q9M2S6 E3 ubiquitin-protein ligase SDIR112762e-139
Q3U2C5 E3 ubiquitin-protein ligase RNF1491686e-011
Q6NRX0 E3 ubiquitin-protein ligase RNF1491686e-011
Q8NC42 E3 ubiquitin-protein ligase RNF1491678e-011
Q68DV7 RING finger protein 431605e-010

TrEMBL top hits (Blast detail)Scoree value
B9HTG7 Predicted protein11017e-118
B9T008 Protein binding protein, putative10936e-117
B9HPE3 Predicted protein10901e-116
C6TKE4 Putative uncharacterized protein10892e-116
C6TGC2 Putative uncharacterized protein10783e-115

Arabidopsis top hits (Blast detail)Scoree value
AT3G55530.1 SDIR1 (SALT- AND DROUGHT-INDUCED RING FINGER1); protein binding / ubiquitin-protein ligase/ zinc ion binding12762e-140
AT5G24870.1 zinc finger (C3HC4-type RING finger) family protein1642e-011
AT5G24870.2 zinc finger (C3HC4-type RING finger) family protein1642e-011
AT1G04790.1 zinc finger (C3HC4-type RING finger) family protein1623e-011
AT3G58720.1 zinc finger (C3HC4-type RING finger) family protein1623e-011

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
214  33%
 
125  42%
 
183  25%

Unigene MembersMember information