RadishBase

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Information for unigene UN39706

FASTA Sequence

Unigene ID: UN39706	Length: 957	SSR
GCTTTGATCGTCATCACACAGATCCTCCATTCTCTATTCGTTTCTCCTTGGAGGATCAGATCTTGGAAGGTCCTCAGCTCAAGGAG AGGAGGAGAAGAAGAAGGGTGAGGATAGAGAGAGAGAGACTTTGAATTGAAGGATGTCTTCTTTCACAGGAACTCAGCAGAAATGC AAGGCTTGCGAGAAGACTGTGTACCCTGTGGAGCTTCTCTCAGCTGATGGTGTTAGCTATCACAAGTCTTGCTTCAAATGCACTCA CTGCAAATCCAGGCTTCAGCTGAGTAGATATTCATCAATGGAAGGTGTGTTGTACTGTAAGCCTCATTATGAGCAGCTCTTCAAGG AGTCTGGTAGCTTCACCAAGAACTTTCAGTCACCTGTTAAACCGGCGGCTGAGAAATCAAGTCCTGAGCTGACAAGAACCCCTAGC CGAGTTGCTGGTATGTTCTCAGGCACACAAGAAAAATGCGCCACTTGCAGTAAAACTGTCTATCCTATCGAAAAGGTAACAGTGGA GAGCCAGACATATCACAAGTCCTGCTTCAAGTGCTCACATGGAGGCTGCCCTATCTCACCATCAAACTACGCAGCTCTTGAAGGGA TTCTCTACTGCAAGCACCATTTCGCTCAGCTTTTCAAGGAAAAGGGAAGTTACAACCACTTGATCAAATCTGCTTCCATCAAACGC TCTGCGGCAGCCGCAGTCGCTGCTGGTACACCTGCAGCCGCCGTTCCTGAATCTTAAAAAAAACTCAAATAATCCTCTCTCTATTC TCTAGTCTAAATTGAAAACTCGATGCCAAACTGATTCAGTTTGTTTTCTCATTTTGTGTCTTTGTGTATGAGTGTGTAATCTATCT ATCCTTTGATGTTCTTTGCTTCCTTTAATCTCTCCTAAAGCTTGTTTGTTGTCGTTATTTGGTATCTCTATTAAAAAAAACTGAGA CTTTCCATTTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_191136 GATA type zinc finger transcription factor-like protein [Arabidopsis thaliana]	988	6e-105
BAH20111 AT3G55770 [Arabidopsis thaliana]	981	4e-104
XP_002876333 LIM domain-containing protein [Arabidopsis lyrata subsp. lyrata]	981	4e-104
XP_002879831 LIM domain-containing protein [Arabidopsis lyrata subsp. lyrata]	964	4e-102
NP_181519 LIM domain-containing protein [Arabidopsis thaliana]	953	7e-101

Swiss-Prot top hits (Blast detail)	Score	e value
P29675 Pollen-specific protein SF3	549	2e-055
Q4U4S6 Xin actin-binding repeat-containing protein 2	237	3e-019
Q1LZA7 LIM domain-containing protein 2	223	1e-017
Q4KM31 LIM domain-containing protein 2	222	2e-017
Q9BT23 LIM domain-containing protein 2	219	4e-017

TrEMBL top hits (Blast detail)	Score	e value
Q9M047 AT3G55770 protein	988	4e-105
B9DH94 AT3G55770 protein	981	3e-104
O04193 At2g39900/T28M21.6	953	5e-101
C6TL24 Putative uncharacterized protein	880	1e-092
A5BSA7 Putative uncharacterized protein	856	9e-090

Arabidopsis top hits (Blast detail)	Score	e value
AT3G55770.1 LIM domain-containing protein	989	2e-107
AT3G55770.2 LIM domain-containing protein	989	2e-107
AT3G55770.3 LIM domain-containing protein	989	2e-107
AT3G55770.4 LIM domain-containing protein	989	2e-107
AT3G55770.5 LIM domain-containing protein	989	2e-107

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	7			100%

Unigene Members	Member information