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Information for unigene UN39784
| FASTA Sequence |
| Unigene ID: UN39784 | Length: 938 |
SSR | | CAAGAGAGAAGAGTCCTTTGGTTTTATTATCTCACTTGCAGAGTAGCTCAAAAACCAAGTTTTGACAAGTTAACCAATGAAAACGA
CAGACAACAACAACAACAACAACAAACATCAGAGAAGACTCCATATTTACATTCGATCTTAAAGCTTTAGAGGATCATCAAGCAGT
GGATATAACACACGGAAAGTAACACTTCTCCTTACCAGTCTGCAACGTTAGTAACCTCCCTGGATAAACGCGTTTAGGCGGTTAAG
CTCCTCGCGATGCTCAGTCACCACTGCACGGACCACATCTCCTATCGACACCATTCCCACCATACCCTTGTCTTTTATCACTGGAA
TGTGCCTAATCCGGTTATCAGTCATTAGCTGCATAGCACGCAACACCTTGGTCTCTGGTGTCACGGTGATAAGCTTATTCTCTTCA
GTCATAATATCTCCTACTTTTGTTGATTTGGATGATCTTCCTTGCACTATGATCTTCCGCAGATAATCTCTCTCTGTAATGATACC
AGCAAGAGACTGTTGCTCACCAGGTTTCACAACCACCAAGGCACCAACATTGTGTTGTGTCATGGATTTAACAGCGTCATAAACAG
AGTCATCAGTAGTACACCAAAGCCAAGATCCATCGGCACTTTTGCCTTTGGCGTTCATAACGTCAGAGATGGTTGTGCTCTCGAAC
CCATGCTCCTCCATACGCGATGACTGAGTCGACTCGGAGCGTTTGCAAAACACAGAAGGCTGGATCGCCGGGTTAATCACACGGAC
ATGTTGCAGCAGAGACGCTTTCACAACGTTTCCACCGGACACAAACGAACGAATCGCAGCTTGCATCTTTTTTCCTGAGATTGATT
AAACAAGAAGAACAGATCGGAGTGAGGAAGCTGAAGAACCCTAGAGTATGAGCAAGAGGCAGAGGACACGAGAGTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_196647 CBS domain-containing protein [Arabidopsis thaliana] | 965 | 3e-102 |
| XP_002873481 CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 965 | 3e-102 |
| CBI15781 unnamed protein product [Vitis vinifera] | 855 | 2e-089 |
| AAT08729 CBS1 [Hyacinthus orientalis] | 853 | 3e-089 |
| ACJ84966 unknown [Medicago truncatula] | 850 | 6e-089 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LEV3 Uncharacterized protein At5g10860, mitochondrial | 965 | 1e-103 |
| O34682 Uncharacterized protein ylbB | 177 | 3e-012 |
| P50100 Uncharacterized protein MK0525 | 164 | 9e-011 |
| P21879 Inosine-5'-monophosphate dehydrogenase | 139 | 7e-008 |
| Q49UU8 Inosine-5'-monophosphate dehydrogenase | 133 | 4e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q676Z5 CBS1 (Fragment) | 853 | 2e-089 |
| B7FJN7 Putative uncharacterized protein | 850 | 4e-089 |
| B9I794 Predicted protein | 843 | 3e-088 |
| B9SK70 Putative uncharacterized protein | 833 | 4e-087 |
| A0T1V6 CBS domain-containing protein | 826 | 3e-086 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G10860.1 CBS domain-containing protein | 966 | 9e-105 |
| AT1G47271.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT5G10860.1); Has 5358 Blast hits to 5270 proteins in 1084 species: Archae - 620; Bacteria - 3536; Metazoa - 1; Fungi - 100; Plants - 159; Viruses - 0; Other Eukaryotes - 942 (source: NCBI BLink). | 456 | 1e-045 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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