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Information for unigene UN39846

FASTA Sequence
Unigene ID: UN39846Length: 898 SSR 
GGAAAATCTCATTCTATTTTCGCTAAACTCTGTAGAAATAATTTAGTGTAACAACAACAACAATGCCAATAATTAAATCTTAACCA
GACCCTTCTCTCACTCTCTCTCTCTCTTACGCACACCACAAAACTGCTTAGTCTTGATTGTCTGTTCATTCAAGATGAAGAAGACG
CTTCTGCTTCTGCTCCTTCTGCGCTTCCTTGTGCAACGGCTACTTCTCCTTCAGTTTCACCTGGCTTTTCTGGTCCGGGTCCAGCT
GATACTTTCACCATTGAAGGACGTAAAAGTCTTTCCCCTAGCAAGAAACCTTTCCTGTATTCTTCAAGTACTATACCCTCTTCGTA
TTCCGCAGAATCCTCCCTCATTATTGCCTCGTGTAGCATCGGATCAAACTGCTTGCCGACAGTCTCCACAGTGACAACACCAAGCG
AACCTAGAATCTCAACAAACTGTTTGTATATGCTCTGGTAGCTGTTTGTGACTTTCTCTTCTCCCTCGGTCTCCACCTTGATCTGG
GACTTAGCTCTCTCGAAATTATCCAAAACCGCCAACAGATTCTCAACAACCTCCCCTTGAGCATTTGAAACAAGGTTCAGCCTCTC
CCTCTCGTTCCTCTTCCTGAAGTTGTCGAAGTCCGCACTGATCCTTATCAGCCGATCCCTCTCTACAGTTAACTCATTAGATAAAG
AGGCGGCTTTCTCCTGGAGTTGAAACTTTTCATCTTCGATGGACTTCAGTGACGCTTCTATCTCAGCAATCTTCTCCTTCCTCCGG
CGAAGGAGACGCAGAAGGGCTTGAAGGGCACAAAGGGTGCATGAGTGAGAGACGGCGTGAGGTAAAAGACGGCGTTTTGAGTAGAC
CGGCCATTGTAGAGTGGCGGAGAGAGAGAGAGGGATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_850840 molecular chaperone GrpE [Arabidopsis thaliana]8757e-092
NP_568356 molecular chaperone GrpE [Arabidopsis thaliana]8757e-092
XP_002873846 EMB1241 [Arabidopsis lyrata subsp. lyrata]8523e-089
XP_002530954 Protein grpE, putative [Ricinus communis]7323e-075
XP_002319738 predicted protein [Populus trichocarpa]7215e-074

Swiss-Prot top hits (Blast detail)Scoree value
Q3ANN0 Protein grpE3772e-035
Q8DJB3 Protein grpE3744e-035
A2C5L7 Protein grpE3682e-034
A5GHN3 Protein grpE3663e-034
Q114R5 Protein grpE3637e-034

TrEMBL top hits (Blast detail)Scoree value
Q94K56 GrpE protein homolog8755e-092
Q9XQC7 GrpE protein homolog8755e-092
B9SY85 GrpE protein homolog7322e-075
B9I664 GrpE protein homolog7213e-074
B6TXQ6 GrpE protein homolog6676e-068

Arabidopsis top hits (Blast detail)Scoree value
AT5G17710.1 EMB1241 (embryo defective 1241); adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization8753e-094
AT5G17710.2 EMB1241 (embryo defective 1241); adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization8753e-094
AT1G36390.1 co-chaperone grpE family protein4542e-045
AT1G36390.2 co-chaperone grpE family protein4542e-045

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
91  25%
 
61  25%
 
81  25%
 
121  25%

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