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Information for unigene UN39858
| FASTA Sequence |
| Unigene ID: UN39858 | Length: 1198 |
SSR | SNP | AATAGAAATCAATCCATAGCCTTGATGAAAAGAACGAAACCACTTGGTACAATACAATCTTATCAGATGCTTGCTAGGAGATAAGT
CATAAAGAGTTGATTCAACAGAAACAAAAGAGATGCAGAAGAACGAAGCTTAACTTTCCAGCCAAAATGACTGAAGCAGAGTACTC
CTAGCTGGTAAAGTGAACAAGTTCTCTAGAAGACAACAGTGTCGAGCATGGTGCCTAGTGTCTGAACAATGTTGGATGACATCAAG
TTGGAAACATGTTCTTCCAGATGCTTCTTTGCGTCCTGTCTTCCCACATTCACGATCGCCAGTTTTTCCGGTGACAACTCGTCCTC
CTCTTGTACCGCCTTGTTATATTTAGCAGCCAAGTTCAACATTTCCTGAACCGTCTGTTCGTTTGTCTTGGAGTGGGTGTCAAAGC
GTCTTAGCGTCAGACCATCTGTCCATTTCTTCTTGTGGAGGTTTAGTAACATCTTCTCCTCGAGCTCGTTCTTCCTATAGTTGATG
GCTATTGAATAGTAGTGTCTGTTCAGTCCATGAATCAAGGCCTGGATCGATGGTTTGTTCAGATGCCCAAGGTTCGACGTTGTCTG
TCGAGGTTCCTGCCCAAGCATAATGGTCTGCGGGTTTATCGAGCGGAACGCATCAATCACCACTTTCCCCTTCACACTTTGAATCG
GATCAACCACCACTGCCACGGCTCGCTGGTTCAAAGCTTCAAAACTCTGTTGAGTATTAATATCAACACCAGAAAGCCAGCATCCA
AATCCAGGATGTGAATGATACCAACCCACCACCATCTCAGGTCTTCCAGTCTGTTTGAGCATGTCGAGCATATTAGTCTGGAAGAC
ATGATCAACAGCTTCGACGCTAACACCAGTACCACTCTGAGGCATAGCGAAAACATCAACAACCCTAACAGTGTACTCATCCACGA
ACTCTCCAAGCATCAATCCCATCACTTCCATAGGAACTCCAGCTCTTCCGTGCTTGAGCATCTTGAGGAGGGCGAGAGAGGAGATG
TAAACTTGCTCCGACGTATCGAGCGTGGGAGAATCAGGCGATGCGTGACCCAGACCGCCACCGGCGCCGAAGATTCGCTGTAATCT
CTCCATAATCTCAGGTAAAATCAGTCGGCTTCTTCTTCTTCTTCGGAGCTGCTTTTGGATCTTATAAAACCTCGAGAGCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_197745 26S proteasome non-ATPase regulatory subunit 14 [Arabidopsis thaliana] | 1579 | 3e-173 |
| AAM64349 26S proteasome non-ATPase regulatory subunit [Arabidopsis thaliana] | 1574 | 1e-172 |
| XP_002872062 hypothetical protein ARALYDRAFT_489215 [Arabidopsis lyrata subsp. lyrata] | 1572 | 2e-172 |
| ABK95816 unknown [Populus trichocarpa] | 1521 | 1e-166 |
| XP_002326923 predicted protein [Populus trichocarpa] | 1521 | 1e-166 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LT08 26S proteasome non-ATPase regulatory subunit 14 | 1579 | 1e-174 |
| O00487 26S proteasome non-ATPase regulatory subunit 14 | 1273 | 3e-139 |
| O35593 26S proteasome non-ATPase regulatory subunit 14 | 1273 | 3e-139 |
| Q9V3H2 26S proteasome non-ATPase regulatory subunit 14 | 1244 | 8e-136 |
| O76577 26S proteasome non-ATPase regulatory subunit 14 | 1110 | 3e-120 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WQQ6 26S proteasome, non-ATPase regulatory subunit | 1579 | 2e-173 |
| A9PHG3 Putative uncharacterized protein | 1521 | 9e-167 |
| B9GNX7 Predicted protein | 1521 | 9e-167 |
| B9MVM3 Predicted protein | 1521 | 9e-167 |
| B9R7G0 26S proteasome non-ATPase regulatory subunit, putative | 1519 | 2e-166 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G23540.1 26S proteasome regulatory subunit, putative | 1580 | 8e-176 |
| AT5G23540.2 26S proteasome regulatory subunit, putative | 1331 | 6e-147 |
| AT1G71230.1 CSN5B (COP9-SIGNALOSOME 5B); protein binding | 330 | 7e-031 |
| AT1G22920.1 CSN5A (COP9 SIGNALOSOME 5A) | 324 | 3e-030 |
| AT1G22920.2 CSN5A (COP9 SIGNALOSOME 5A) | 324 | 3e-030 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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