 |
Information for unigene UN39868
| FASTA Sequence |
| Unigene ID: UN39868 | Length: 1181 |
SSR | | GTGATCGGAGCTCTGGTCCTTCCTGACACTCCAAACTCCCTCATCGAACGTGGCTTCGCTGAAGAGGCCAAGGAAATGCTTCGATC
TATCCGAGGAACCGATGAAGTCGAAGAAGCGTTTCAAGATCTCATTGATGCAAGTGAGGAGTCTAAGCAAGTGAAACATCCGTGGA
AGAACATCTTGCTTCCACGTTACAGACCACAGTTGATCATGACTTGCTCCATTCCTTTCTTCCAACAGCTTACAGGAATCAATGTC
ATTACATTTTACGCACCCGTTCTGTTCCAAACCTTAGGGTTCGGTAATAAAGCCTCGCTCTTATCAGCTATGGTAACGGGTATCAT
CGAGCTCTTGTCTACCTTCGTCGCTGTTTTCACAGTTGATAGGTTCGGAAGAAGAATCTTGTTCCTCCAGGGAGGTATCCAGATGC
TTATCTCTCAGATCGCTATTGGAATCATGATTGGAGTCAAATTTGGAACAGCAGGAACAGGGAACATAGGGAAAACAGATGCTAAT
GTAATCGTGGCACTGATCTGCATCTATGTAGCGGGTTTCGCCTGGTCATGGGGACCGTTGGGATGGCTGGTACCTAGTGAGATATC
TCCTCTAGAGATCCGATCAGCAGCACAGGCCATAAACGTAGCGGTCATCATGTTCTTCACATTCCTTGTAGCTCAGCTCTTCCTCA
CAATGCTCTGCCACATGAAATTCGGACTATTCTTCTTCTTTGCGGTGTTTGTCTTCATAATGACGATATTCATCTACTTGATGTTG
CCTGAGACGAAGAATGTACCAATCGAAGAGATGAACAGAGTGTGGAAGGCACACTGGTTCTGGGGAAGGTTTATACCTGATGAAGC
CGTTGGTGTAAGTGCTGCTGAGTTGCAACAAAAGGCGGTATGATGATGATGATGGAACAACATTTTCTTTGAGCAAAAGACTTGAG
AGAAAACTTGAAAAGAGAAAGGTGATGATTAAAAGGATGAAATAAGAATGAAATGTCGAATAATGTGTTTATTCTTAAAAGAAAGC
TTCTCTGCTTTTTAACGCAGAGACTTCATCTTATCACTTAGTTTATTCTTTCTTCTTATTCAATGAATCTTTGTTTCACTTGTAGT
TTCGGCCTAAAGAAAGTCAAGAAAACAAAAACATTTGAAAGTGAAATCAGTTCGTCTTATGCT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_188627 sugar transport protein 4 [Arabidopsis thaliana] | 1426 | 1e-155 |
| XP_002883211 hypothetical protein ARALYDRAFT_898390 [Arabidopsis lyrata subsp. lyrata] | 1423 | 3e-155 |
| XP_002310644 predicted protein [Populus trichocarpa] | 1134 | 1e-121 |
| XP_002520406 sugar transporter, putative [Ricinus communis] | 1125 | 1e-120 |
| XP_002306376 predicted protein [Populus trichocarpa] | 1120 | 4e-120 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q39228 Sugar transport protein 4 | 1426 | 6e-157 |
| Q9LT15 Sugar transport protein 10 | 1085 | 2e-117 |
| Q9FMX3 Sugar transport protein 11 | 1051 | 2e-113 |
| Q9SX48 Sugar transport protein 9 | 1042 | 2e-112 |
| Q41144 Sugar carrier protein C | 1003 | 7e-108 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9HGG0 Predicted protein | 1134 | 7e-122 |
| B9S337 Sugar transporter, putative | 1125 | 8e-121 |
| B9H5Q5 Predicted protein | 1120 | 3e-120 |
| B9HGG1 Predicted protein | 1110 | 4e-119 |
| C0PHL2 Putative uncharacterized protein | 1049 | 5e-112 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G19930.1 STP4 (SUGAR TRANSPORTER 4); carbohydrate transmembrane transporter/ monosaccharide transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter | 1427 | 4e-158 |
| AT3G19940.1 sugar transporter, putative | 1085 | 2e-118 |
| AT5G23270.1 STP11 (SUGAR TRANSPORTER 11); carbohydrate transmembrane transporter/ sugar:hydrogen symporter | 1051 | 2e-114 |
| AT1G50310.1 STP9 (SUGAR TRANSPORTER 9); carbohydrate transmembrane transporter/ sugar:hydrogen symporter | 1046 | 6e-114 |
| AT1G11260.1 STP1 (SUGAR TRANSPORTER 1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter | 998 | 2e-108 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
