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Information for unigene UN39880

FASTA Sequence
Unigene ID: UN39880Length: 907 SSR 
GCTATCGACGAATTACAATTTCTGTAAAAACCTAATCCCTCTTCTTGTTCTTCAACGGGCCCAATGGGATCTTGCTCAACACCTTC
TCGTCCAACACTGCATACTGCTTCTTGATCTCGATCATTGCTTTCTCACCCAACGGGTCGACTTTGTCTTCATACTTGTCGTAGGC
AAGAGGCACCGTGAAGAGCAGCACAAGAGCTATGTATGCCAATGTCAAGAAATTGAACCAGCCGCCCAAGATGGAGAGAACCCACA
AGCCAGCAATAGCCGTAACAAACTTCTTGAGATCCCTCCCAGAGGCAATCTCACGAAGAGAAGAGAACCCTCTATTGATCTCGATC
CTGAGCCCAGACGCAAGCTGGAGAATAGGCTCCTCAGGGATATGAACTTCAGGAATCTTCGGTGGAGACTTGTTAATAAACACAGT
GGCGTTAGACCAGAGAAACAACACAGCGAGCACAACAATCATGACGTGGCAGAGCAGAGTGAGAAGGTGATACTCCATCGACTCAA
AGAGAACCCAAGCGGCTGTAGCACCACCGAGTACACCACCAGACATCTTCTTGTTCTTCCACATGAATATATCCGCCGGTTTTCCA
CCGCCGAGGACCTTGTGGACAGGCTTCTCCCTTCCGAACAAGCGGTAGACTTTCGATTCCATCGAAGAAGGAGAGCTCTCCGAAGA
CTTCTTCTTCTTCTTGTCGTCTTCGTCATCTGACGACGACGAACCACCACCGTGGTGGAGCTTCTCCGATATCTTGTCCATCAGCG
GTTCCCTCTCCACAATCTCAACAGCTGGCTCCGAAAACGGTTACAGGTTCGTCGTGTTTGTGTTCGTCAGTCATCTTCTCCGATTC
GATTTCACGCAGATGTTAAGAAGCTTTCAGATTCGATTAGAGAATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ33905 unnamed protein product [Thellungiella halophila]12271e-132
ACC91263 reticulon family protein [Capsella rubella]12045e-130
NP_194094 reticulon-like protein B1 [Arabidopsis thaliana]12011e-129
XP_002869770 VIRB2-interacting protein 1 [Arabidopsis lyrata subsp. lyrata]11769e-127
NP_192861 reticulon-like protein B2 [Arabidopsis thaliana]11168e-120

Swiss-Prot top hits (Blast detail)Scoree value
Q9SUR3 Reticulon-like protein B112015e-131
Q9SUT9 Reticulon-like protein B211164e-121
Q9FFS0 Reticulon-like protein B48923e-095
O82352 Reticulon-like protein B58323e-088
Q9SH59 Reticulon-like protein B38162e-086

TrEMBL top hits (Blast detail)Scoree value
B2WS91 Reticulon family protein12044e-130
B9RCJ7 Putative uncharacterized protein9491e-100
B7FIA7 Putative uncharacterized protein9293e-098
A9PAK3 Predicted protein9151e-096
B9GX32 Predicted protein8962e-094

Arabidopsis top hits (Blast detail)Scoree value
AT4G23630.1 BTI1 (VIRB2-INTERACTING PROTEIN 1)12024e-132
AT4G11220.1 BTI2 (VIRB2-INTERACTING PROTEIN 2)11173e-122
AT5G41600.1 BTI3 (VIRB2-INTERACTING PROTEIN 3)8932e-096
AT2G46170.1 reticulon family protein (RTNLB5)8323e-089
AT1G64090.1 reticulon family protein (RTNLB3)8162e-087

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  100%

Unigene MembersMember information