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Information for unigene UN39897
| FASTA Sequence |
| Unigene ID: UN39897 | Length: 1488 |
SSR | | TAGAGGAGATTAAAGTTGCCGCTTCCTTTGATTTCATTCTCCGGAGGAATCAATCACTCTTTTTCTCCGAAAACAAAAGAAAAATG
CAGAGGAATGGGATGAGAAGAGCCCATTCTTTATGGTGCAAGAGTTTAACACACAACTTGCATCATCATCATCATCCGTCTATTCC
AGTCACCACCACCACCATGTCTAGTTTGGAGGAGCTGAGCTCCATAGACAGGATCCAGAGGAGGGTAACAGATTGCAATGATGGTA
AAAGCTTCCGTATGCATTCTCGGAAAGTATCTCAACGGCAACTTGTATTTGGCAACTCATCAGTTTCTGGCACTCTATCCAAACAT
TTTCACACCTTACCACATTCACTTAACAAGCAGCACCAGCTCCTTAGAGAAGTACCCAAGTTTGTGAAGATTGTAGAAGTTGGTCC
AAGGGATGGCCTTCAGAACGAGAAAAACATTGTTCCCACTTCTGTTAAGGTGGAACTCATTCGGAGATTGGTTTCTGCTGGTTTGC
CCGTTGTCGAAGCTACTAGCTTTGCCTCTCCTAAATGGGTTCCCCAGCTTGCAGATGCAAAGAATGTAATGGATGCAGTTAATACT
CTACATGGGGCGACTCGATTGCCTGTTCTGACTCCCAATCTTAAAGGTTTTGAAGCAGCTGTGTCTGCAGGTGCTAAGGAAGTTGC
AATCTTTGCATCGGCTTCCGAGTCATTCTCTTTATCAAATATTAACTGTTCCATCGAAGAGAGTCTCTTGAGATATCGTGCTGTTT
CCACCGCTGCAAAGGAGCTTTCCATTCCTGTCCGTGCGTATGTATCTTGCGCGGTGGGGTGTCCAGTGGAAAGGAGCGGTTCCACC
TTCAAAAGTAGCGCATGTTGTTAAAGCGCTCTATGACATGGGCTGCTTTGAGATTTCTCTTGGTGATACAATTGGAATCGGCACTC
CTGGTACTGTGATTCCCATGCTTGAAGCCGTGATGGCAGCTGTGCCAGGGGAAAAGCTGGCTGTTCACTTCCACGACACCTATGGA
CAAGCTCTTTCAAACATATTGGTCTCTCTCCAAATGGGAATAAACATAGTAGACTCATCAGTTGCTGGATTAGGGGGTTGCCCATA
TGCAAGAGGAGCGCCAGGAAATGTAGCAACAGAAGATGTGGTTTACATGTTAAACGGTTTGGGGGTCCAAACCAACGTCGATTTGG
GAAAGCTTATAGCTGCTGGAGATTTCATCAGCAAGCATCTTGGCCGTCCTAACGGTTCCAAGGCTGCTGTTGCTCTCAGCCATCGG
ATCACAGCTGATGCCTCCAAGCTATGAATGGAGCTCATTAGTATCGGAAGATGTGCGTTTATGTTTATGTTTGGTTTTCGGAATAT
TTGTCATTGTGTTCATTCACACCAAAAATAAGTAATCAGTAGACAGACACTCTCTGTGAGATAAGCTTCTGCTTTGTAAAACTCCT
TTTCACTATAATGATGATACTTACGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002880836 hypothetical protein ARALYDRAFT_481553 [Arabidopsis lyrata subsp. lyrata] | 733 | 4e-075 |
| NP_565629 Hydroxymethylglutaryl-CoA lyase [Arabidopsis thaliana] | 713 | 9e-073 |
| NP_850087 Hydroxymethylglutaryl-CoA lyase [Arabidopsis thaliana] | 713 | 9e-073 |
| BAE71196 putative hydroxymethylglutaryl-CoA lyase [Trifolium pratense] | 661 | 1e-066 |
| BAD81168 putative hydroxymethylglutaryl-CoA lyase [Oryza sativa Japonica Group] | 653 | 8e-066 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O81027 Hydroxymethylglutaryl-CoA lyase, mitochondrial | 713 | 4e-074 |
| P97519 Hydroxymethylglutaryl-CoA lyase, mitochondrial | 505 | 5e-050 |
| P38060 Hydroxymethylglutaryl-CoA lyase, mitochondrial | 502 | 1e-049 |
| P35915 Hydroxymethylglutaryl-CoA lyase | 500 | 2e-049 |
| Q8TB92 Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2 | 499 | 3e-049 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2PF06 Putative hydroxymethylglutaryl-CoA lyase (Fragment) | 661 | 7e-067 |
| B8AC86 Putative uncharacterized protein | 653 | 6e-066 |
| Q0JNR8 Os01g0269000 protein | 653 | 6e-066 |
| Q5NBI8 Putative hydroxymethylglutaryl-CoA lyase | 653 | 6e-066 |
| B9HNI0 Predicted protein | 640 | 2e-064 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G26800.1 hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative | 714 | 3e-075 |
| AT2G26800.2 hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative | 714 | 3e-075 |
| AT2G26800.3 hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative | 672 | 2e-070 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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