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Information for unigene UN39931
| FASTA Sequence |
| Unigene ID: UN39931 | Length: 1793 |
SSR | | GGGAAACTCAAGAATAGACAACAAGGTCTATAAAGTAAATTTCGTTGAAGAATTTGATCTTTGCTGATTCAAGAAGATGGGGACAA
CACTTGGGAAGCCATTTGCTGGTCTATTCCAAGAAACCGAACCGAGAATAGTGTTTTTCGGCCTCCCCGGTACTGGAAAATCATCT
ATACTTCACAAACTCAAAACCGGTGAAGTGCTTTCCACAAACACCCCCACCGGTGGATTAGACATGGAAAGCTTTAAATACAAGAA
CTCGAGCTTCTGTTTCGTTGAAATGGGCGGGCAATATCGGTATAGGATGATACCGTTATGGAAACATTACTTTCGACAAGTATCAG
GGTTTGTGTACGTGGTCGATACCACAGACAGAGAGCGAATGGAAGAGGCAAAGAGTTTCCTTCACATGGTGATGTATGAGGGGAAA
GTACCGGACAATGTTGCCGTTCTTGTTTATGCAAACAAGCATGAGGTTCCTGGTGCCATGTCTGCTTCTGAGATCAGTAATGTACT
TGATCTCACTTCTCTTCGTCAGAGAAATTGGCAAAGAAACTGACATGTCCAGAGCTCATGTGCATTATGTGGTGACGGTTTACATG
AAGGACTCGACTGGCTCTTGAAAAATGCTGAAAGTATTTAACAAAGTTCTGCTTTTTATTTAATGCTAAATCTTCTGTTTCAAGTT
ATTAAGCACATAACTAAGAGACAATTGCACAACAAAGATGCCTCGTAAAATTCGACAAAGATTAGAGAGAGTTTCTTTTTAGAAAA
ATGACACATTTTACTTGGTTTCTTGAACTGGAACAGAGCTAGTATTGTCGACCGAATCTGTAGTATTTTCCTCGGACACCTTGAAG
AAAGTGTAAGACAATATCAGGTTGTTGATTCCGTCCATTCTTGAATCAGTCTCAAACTCAGGATCAATGTAGAAAAACACCGGCAT
GTCGATCTGTTCTCCGGGAAGAAGTCGCTGCTCCTCAAAGCAAAAGCATTGTATCTTGTTGAAATAAACTCCTGCCTTCATGGGAG
TGACATTGTAAGTGGAGACTCCGGTTATTGGAGCTGAACTTTTGTTTTCAGCAGTGTAAAAGGCGAGCGCGCTTTCTCCTGGCTTT
ACTCTCACCTCTCTTTGAGTAGGAGTGAACTTCCACTGCATCCCATCTGCAACATCAGCATTGAACTGCACCACAATCTCCCTTTC
AGTGACGGTACCAGATTCTGAATGCCTAGCAATCTTCTCCTCAACAGTCTCTTTGCGTTGGACAGTACCTCCATATCCAGTAGCTT
GGCAGAAGGTTCTATACAATGGCACAGCGGCGTAAGTTAGCCCAACCATACCAAAGACGACAGCAGTGAGGTAATAGAGCATTTTC
TTTGATTTGGTTTCTGTTATTATCGACTGAGTAGAAGAATAGTGGCGATGAGCACTAGTAAGCAACATCGATTTAGCAGCAGCAGC
AGCAGGATGAGAATTCAAAGTGAAAAACGAAGATGAGCTTCCCAAAAGCCCTCTCTTGTTTCGGAGATTGCCATTACAAGCTCCAT
GAGTGTAATAACGAGAGCTAGGCACAAGAGGCACAGTCCTCGATGTTCGATGAAGATTCTCTAAATATGAAGAGATTCGAGTCCCT
CTACATGCCTTCGACCACGACATGGCCGAAGATTAATTATCTCAATCGATTGACACAGTGAGGAAACACTACACACAACTACTAAT
CGGTAACGGAACGGCGTCCTTGTATCGTCGGCGTAAGAGAAATCAAAGACGGCACATGAAAGAAAACCAAAGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002889401 cytochrome c oxidase assembly protein CtaG [Arabidopsis lyrata subsp. lyrata] | 1239 | 1e-133 |
| NP_171743 cytochrome c oxidase assembly protein CtaG / Cox11 [Arabidopsis thaliana] | 1220 | 2e-131 |
| AAG00893 Similar to cytochrome-c oxidase assembly protein [Arabidopsis thaliana] | 1027 | 5e-109 |
| XP_002297920 predicted protein [Populus trichocarpa] | 832 | 2e-086 |
| XP_002277478 PREDICTED: hypothetical protein [Vitis vinifera] | 812 | 4e-084 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| A3KMZ6 Cytochrome c oxidase assembly protein COX11, mitochondrial | 511 | 1e-050 |
| Q6P8I6 Cytochrome c oxidase assembly protein COX11, mitochondrial | 505 | 6e-050 |
| Q9Y6N1 Cytochrome c oxidase assembly protein COX11, mitochondrial | 501 | 2e-049 |
| O21243 Cytochrome c oxidase assembly protein ctaG | 496 | 7e-049 |
| Q86ZU7 Rsm22-cox11 tandem protein 2, mitochondrial | 480 | 5e-047 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8GWR0 At1g02410 | 1220 | 1e-131 |
| Q9FZ20 T6A9.10 protein | 1027 | 3e-109 |
| B9GK24 Predicted protein (Fragment) | 832 | 1e-086 |
| B6T5S8 Cytochrome c oxidase assembly protein ctaG | 792 | 5e-082 |
| A2XLF5 Putative uncharacterized protein | 783 | 6e-081 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G02410.1 cytochrome c oxidase assembly protein CtaG / Cox11 family | 1241 | 3e-136 |
| AT1G02440.1 ATARFD1A (ADP-ribosylation factor D1A); GTP binding | 694 | 7e-073 |
| AT1G02430.1 ATARFD1B (ADP-ribosylation factor D1B); GTP binding | 672 | 2e-070 |
| AT2G47170.1 ARF1A1C; GTP binding / phospholipase activator/ protein binding | 424 | 1e-041 |
| AT3G62290.1 ATARFA1E (ADP-ribosylation factor A1E); GTP binding / phospholipase activator/ protein binding | 422 | 2e-041 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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