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Information for unigene UN39945
| FASTA Sequence |
| Unigene ID: UN39945 | Length: 1144 |
SSR | | GGGAGATTGTGATCACAGTAGGGCAAAAGACTAACTTTAAAGATTTATCGATCTAGTCATCTGGGTCTTCTTTTATAGTGGTTCTG
AGAATGGATCAAGCTTCGTCTTCATCGAATGTTAAGGATCATGTGGGCGTCGATGATAACGAGGAGAGGGAAGCTTTAGAGATTCC
TCTCTTCCAAGTGCCTGAATGCTATGTTTATTTGATACCTCCAAGGAAAAGCGCAGCTTCCTACAGAGCGGATGAATGGGACGTGA
ACAAATGGGCATGGGAAGGAGCGTTGAAAGTGGTGAGCAAAGGAGAAGAGTGCATTATCAAACTTGTAGATAAAACCACTGGAGAA
CTTTACGCTCAGGCCTTTCTCCGAGATGGTGAGCTTCATCCAGTAGAAGCTGTAATCGACAGTAGCAGATATTTTGTTCTCCGTGT
GGAAGAAAACATAGGTGGTCGTGCTCGTCATGCTTTTATTGGACTCGGATTCAGGGAGAGAACTGAAGCATATGATTTCCAAGCAG
CACTACATGACCACATGAAGTACTTGAACAAGAAGAAAACAGCAGAAGAGATGGAACAACACTTTCAGCACACTTCATCTGTTGAT
TACAGCTTAAAGGAAGGAGAAACCATTGTTCTCCAACTCAAAAATATGAGCGAGAAGGACACAAAGTCTAAGGTTGTAGAGAAGAG
TCTGACCAATCTCTCTTTGGAGGATAAGGGAAAGTCTATAGAAACCACCATTCCTCCAATCATCCCTCCGCCTCCACCTCCTGGAC
CGCTTTCTCCTGCCACAACAGCACAGAAGTCCCCATCAAGCCTCAGCTTCCAAAGATCATCTGAACAACAAGATCTAGATACAAAG
CGAGAAGAAGTAGAGAAGAAAGAAGACCAAGAAGCTACAGAAACGGGGGTTGAAGATGCACCAGATGATGACTTTGGAGATTTCCA
AGCCGCTGGTTGATTTAGCCATTAAGTATTGTTTACCATACAGAAAGCATCGTTTTATATAAGTAATGTGACTGATCAAAGTTTGG
ATTGTTTGCTTTTGAGAGAGAGAGAAGTCCACCTCCTGTACAATTGCTTACAAAGACTATTTTTCTGAACTTGTGATTAGATAGTT
AAACTTTGAAGTCTTTTCATTCATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002878229 hypothetical protein ARALYDRAFT_486311 [Arabidopsis lyrata subsp. lyrata] | 1316 | 8e-143 |
| NP_567071 Adaptin ear-binding coat-associated protein 1 NECAP-1 [Arabidopsis thaliana] | 1294 | 3e-140 |
| AAM63770 unknown [Arabidopsis thaliana] | 1274 | 6e-138 |
| CAB68198 putative protein [Arabidopsis thaliana] | 1158 | 2e-124 |
| XP_002280009 PREDICTED: hypothetical protein [Vitis vinifera] | 978 | 1e-103 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9NVZ3 Adaptin ear-binding coat-associated protein 2 | 355 | 9e-033 |
| Q6P756 Adaptin ear-binding coat-associated protein 2 | 353 | 2e-032 |
| Q9D1J1 Adaptin ear-binding coat-associated protein 2 | 350 | 3e-032 |
| Q681Q7 Uncharacterized protein At1g03900 | 350 | 3e-032 |
| Q5E9Q4 Adaptin ear-binding coat-associated protein 2 | 349 | 4e-032 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q84WV7 Putative uncharacterized protein At3g58600 | 1294 | 2e-140 |
| Q8LC98 Putative uncharacterized protein | 1274 | 4e-138 |
| Q9M2F6 Putative uncharacterized protein F14P22.190 | 1177 | 7e-127 |
| B9MW34 Predicted protein | 969 | 9e-103 |
| B9SGK0 Adaptin ear-binding coat-associated protein, putative | 962 | 6e-102 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G58600.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: endocytosis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adaptin ear-binding coat-associated protein 1 NECAP-1 (InterPro:IPR012466); BEST Arabidopsis thaliana protein match is: ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4); ATPase, coupled to transmembrane movement of substances / transporter (TAIR:AT1G03900.1); Has 329 Blast hits to 329 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 191; Fungi - 43; Plants - 52; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). | 1295 | 8e-143 |
| AT1G03900.1 ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4); ATPase, coupled to transmembrane movement of substances / transporter | 350 | 3e-033 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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