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Information for unigene UN39950
| FASTA Sequence |
| Unigene ID: UN39950 | Length: 878 |
SSR | | CCATGCATGATCCAATAGTATATAGAAAATCTCAAAGGCTCAATAAGTGAACAGTAGTTATAAGTCAAGAAGAGTTCAAATGATCA
AGACGGGGTTCTCTAGATGTTCCAATCTGTCTTTGATTCGCGCCCAAACCTTCTTCTTCTTCTTCCTCTTCACTGTAATCATCACC
ATCTTGGTTTGCTTCCTCAACTGACAACATATTAGATTTACTCTCAATCTTGTCTTCGTCGCTGCTTAAATCTCTTTCCCCTTCGC
TCAGCTCATTCAGCTGCTTGGCCTTGACCTTGACACGTCTTCCTTTGATATATCTGAACTCCCACTGTGGTGGAGGATACTTCTTC
ATCAGCTTCTCGTACTTATCATTCATCCCAAGTTTCAAAAACACTTTCCCAACCATATCCACAATCGCAATGTTAGGTTTCACTCC
AAGCTCCTCCATGTCAGCAAACACCTCAAAGAGTTTGTGGTGCATGTCTCTCTTGTAATAGATAGAGATCATTTTGTTGAAGAACT
TTCTTGGAGTTCCTTCTAAATGCTCCATGAACAACTTGTTCCATAGTTCCTCAGCTTCGTCAAGCCGGTTATCTTCAGTTAGAGCG
TTTAGTAATGAGAAGTAAGTTCCCATTGTTCTTCCTTGGCCTTTGCTCAGCATCCATTTTGTCACCTGAATAATCTTCTTCCACTC
TCTTTCGTCTTCAAGAATAGCTAAAGCTCTTCTTGACTATGACAAGAGGGAACTCCAACTCCCAGGCAATGAAGGAATCAAGCGCT
CCGTATACTTCTTCTTTAACGTTCGACAATTCTTTTATACAAGCAATCATCTTGGCAGACTTGGAGATACTTCCAATTCTCTTCCT
TGTTTTCCATACTCGAGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002867860 EMB1417 [Arabidopsis lyrata subsp. lyrata] | 964 | 3e-102 |
| NP_567622 pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | 899 | 1e-094 |
| CAA17538 putative protein [Arabidopsis thaliana] | 899 | 1e-094 |
| XP_002513638 pentatricopeptide repeat-containing protein, putative [Ricinus communis] | 650 | 8e-066 |
| XP_002274318 PREDICTED: hypothetical protein [Vitis vinifera] | 633 | 8e-064 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8LG95 Pentatricopeptide repeat-containing protein At4g21190 | 899 | 5e-096 |
| Q2V3H0 Pentatricopeptide repeat-containing protein At4g18975, chloroplastic | 328 | 8e-030 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RIR9 Pentatricopeptide repeat-containing protein, putative | 650 | 6e-066 |
| B9MX61 Predicted protein (Fragment) | 629 | 2e-063 |
| B8A9S3 Putative uncharacterized protein | 561 | 1e-055 |
| C6TL55 Putative uncharacterized protein | 561 | 1e-055 |
| B9EZR0 Putative uncharacterized protein | 555 | 6e-055 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G21190.1 emb1417 (embryo defective 1417) | 907 | 5e-098 |
| AT4G18975.1 pentatricopeptide (PPR) repeat-containing protein | 328 | 7e-031 |
| AT4G18975.2 pentatricopeptide (PPR) repeat-containing protein | 328 | 7e-031 |
| AT4G18975.3 pentatricopeptide (PPR) repeat-containing protein | 328 | 7e-031 |
| AT1G04590.1 FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: emb1417 (embryo defective 1417) (TAIR:AT4G21190.1); Has 54 Blast hits to 54 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | 250 | 8e-022 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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