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Information for unigene UN39960

FASTA Sequence
Unigene ID: UN39960Length: 1131 SSR 
GGCCCTCGACGCAGAACGAAAAAGAGAGAAAACACCGTGCGACGACGACGAAGAAGATTCTCTAATCTCTTCGTGTTAGGTTTAGC
TCTTTTGACAAAAAAGGGGAATTAGTGAAGAGTGATGCGATTTTCTTCACCAGGCGGTGTTTGATTCGCTTATCGATTTGTTTAGT
GTAAAACCATATTATATAAATAGACTCTAGAAATGATGATGATGATGGGTTTCGAGATCTCCGATGAGTTTCTGGGAACGTTCGTG
CCGATTTTGGTGTATTGGGTGTATTCAGGGATGTACATTTGCTTAGGATCTTTGGAGAGGTATCGATTGCATTCCAAGGTGGACGA
GGACGAGAAGAATCTCGTCACTAAATCCGCCGTCGTCAAGGGCGTCCTCCTTCAGCAGGCTCTCCAGGCCATCATCTCCGTTATCC
TCTTCAAGATAACAGGAAGTGATGATGCAGATGCGTCTACGACGCAGCAATTCTCCCTTCTACTCTCGCTAGGCAGTTTATCATCG
CCATGCTCGTTATCGACACTTGGCAATACTTCATCCATCGCTACATGCACATCAACAAGTTCTTATACAAGCACATCCACTCTCAG
CACCACCGCCTCATCGTTCCCTACTCATACGGAGCTTTATACAACCATCCACTAGAAGGCCTTCTCTTGGACACCGTCGGTGGTGC
TCTGTCTTTCCTCTTCTCCGGTATGTCCCCGAGAACCGCCATCTTTTTCTTTTCCTTCGCCACCATCAAGACGGTTGACGATCACT
GTGGACTCTGGCTCCCCGGAAACCCCTTTCACATCTTCTTCACTAATAACTCTGCTTACCATGATGTTCATCATCAGCTCTACGTA
ACCAAATACAATTTCTCGCAGCCCTTCTTTGTCATGTGGGATAGGATTCTCGGTACTTACTTGCCTTACTCGCTTGACAAGAGAGC
CACTGGAGGGTTTGAGACACGGCCAATCAAAGCGTCCAAAGATGAGTAACTTTTCTTCTTCTTTTTTTTTTGGTGTTTCTTTATCA
CTGCTTTTACGTTACTTCATCATTTACTCGCTAGAGAACCATTGTAACCTCTCTGTGTACTTGTATCTGTGTACATACAATCCCAA
TCTCTCCTTTTCG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_563944 sphingoid base hydroxylase 2 [Arabidopsis thaliana]8849e-093
AAF43928 Contains similarity to acid phosphatase from Lupinus albus gb|AB023385 and contains a Sterol desaturase PF|01598 domain. EST gb|AI995340 comes from this gene [Arabidopsis thaliana]8849e-093
XP_002892798 hypothetical protein ARALYDRAFT_888804 [Arabidopsis lyrata subsp. lyrata]8803e-092
ACJ85728 unknown [Medicago truncatula]8023e-083
AAG12703 acid phosphatase, putative; 5376-6903 [Arabidopsis thaliana]7997e-083

Swiss-Prot top hits (Blast detail)Scoree value
O94298 Uncharacterized hydroxylase C887.15c5001e-049
P38992 Sphingolipid C4-hydroxylase SUR24419e-043
Q6UGB2 C-4 methylsterol oxidase2276e-018
Q15800 C-4 methylsterol oxidase2204e-017
Q5R574 C-4 methylsterol oxidase2204e-017

TrEMBL top hits (Blast detail)Scoree value
Q9AST3 At1g14290/F14L17_48846e-093
Q9M9T3 F14L17.5 protein8846e-093
B7FLU5 Putative uncharacterized protein8022e-083
Q8VYI1 At1g69640/F24J1.227995e-083
Q9FWZ2 Acid phosphatase, putative; 5376-69037995e-083

Arabidopsis top hits (Blast detail)Scoree value
AT1G14290.1 SBH2 (SPHINGOID BASE HYDROXYLASE 2); catalytic/ sphingosine hydroxylase8853e-095
AT1G69640.1 SBH1 (SPHINGOID BASE HYDROXYLASE 1); catalytic/ sphingosine hydroxylase8002e-085

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  25%
 
61  13%
 
95  63%

Unigene MembersMember information