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Information for unigene UN39975

FASTA Sequence
Unigene ID: UN39975Length: 1057 SSR 
ATAGTATAAGCTTAATTACAGGTCTCTGATCGGAGTAGTACAATCAAATGTCGGAAAATCTTGGTATATTCAAAGATTTATAGATC
AGAATATACAAGTGAGTAGAAAAACGTGTGTATATCTATCTAAGCGGTAGAGAAGTAGAAAACTACTTCAACTTGGGTCTTGAGAG
AAAAAAATAAAACTCAAAGATCATGAATAACACCTTCAATGAGTTTCTGAGCTGCATCTCTAACACTCAAAAGGTTAGTTTTGATC
TCATTACACAATCTTCCTTCAACTAGCCGTACAGGTAACCACATCTTTGGTTTTACATCCACGGTGTACGCAAGCGTGGTCGGAAA
ATCTTTAAACTGTAAATCCAAAGCCTCCCCTTTGTCTAATTGTTCGATGGACCATTTGCCTTCAAACAATTGAAAATCTCCTTCGA
CCATCTTGAAATCGATTTCACGTCTCCTCCCATGTGGCAGAATCTCAAGCTCCTTCTCGAAACAATCTAGAACAGCTTTGGCATTG
AACTTAAGACCCAATGCTAAGTTTTGCTGTCCCATCTGGAAAAGACGAACACGGTTTCCTTCCTTCTCCACCAACTCGCTGACGAC
AAGGCCCGGTATGAACTCCGACAGCTTCTCGTAATCAGTCAACACGCTCCACACGGATTCAAGGCTAGCTTCCATTCCGATCTTCG
AACGGATTCGCCGCGAGCTCTTCTCCTCGAGCTTCTCCACCGAGATGAGAACCCCATCCTCCACCGTCTTCCCATCTGTCAAGCAT
TCAACCAAATAATCATCCCTTTCACTCTCATCCTCCTCCTCATAATAATAATAATAATCTTCGTCGCCAAATCGGCAGGTGAGACA
TCTACGAGAAGAATAAGCTAGTGGTAGTGTCGAGGAAGGCGAATAGAAGGATGGAGTGTGAAATTTTATCGCTGGAGAATGTGAAA
TTGATACACTGGAGGTAGTGGTGGTGGCTAATGCGGCGGCGCGTGGGTGGCGGAAGGCGGAGGAGAAGTCTAATGCGAGCTGCATT
GTTTTCTATAGATCTGGAAGTCTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002872882 hypothetical protein ARALYDRAFT_490412 [Arabidopsis lyrata subsp. lyrata]10792e-115
NP_192074 Polyketide cyclase / dehydrase and lipid transport protein [Arabidopsis thaliana]10756e-115
AAC72863 T15B16.3 gene product [Arabidopsis thaliana]10514e-112
NP_849282 Polyketide cyclase / dehydrase and lipid transport protein [Arabidopsis thaliana]8821e-092
XP_002320926 predicted protein [Populus trichocarpa]6241e-062

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9M120 Putative uncharacterized protein AT4g0165010754e-115
Q9ZSI3 T15B16.3 protein10512e-112
Q84VW2 At4g016508821e-092
B9I991 Predicted protein6248e-063
B9GRV7 Predicted protein6184e-062

Arabidopsis top hits (Blast detail)Scoree value
AT4G01650.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08720.1); Has 322 Blast hits to 309 proteins in 56 species: Archae - 0; Bacteria - 121; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).10762e-117
AT4G01650.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08720.1); Has 322 Blast hits to 309 proteins in 56 species: Archae - 0; Bacteria - 121; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).8834e-095
AT5G08720.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01650.2); Has 578 Blast hits to 324 proteins in 67 species: Archae - 1; Bacteria - 248; Metazoa - 1; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).1953e-015

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
94  80%
 
121  20%

Unigene MembersMember information