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Information for unigene UN40051

FASTA Sequence
Unigene ID: UN40051Length: 1099 SSR 
AACCCTTAAACCACATCATAGTCAACATTCACATAAAAGTTATAACATCTTCTACTTTTGACCCTAACTACCCATTCATACAGAGT
TTTTCACTCAATCTTCGAATACTTAATCACATTGAAAGCACAGTAACCTGAAATTTCACTCAAAACAAACAGATAAAAGACCCTAC
ATGAAATTTTTGAACTTTGGGAACGAAAACCGCTCCTGAAAAGTCTCACACGTACTGATTGACGCGGAAGGCAGTGACTTTAAAAA
CGAAGTCCCGAGTACTGAAAAGCTCAAACACACAAACATCTCCTTCACCTATATTGTTCTCAAGCGTGAACTCATACCATCCTTGG
CTGAATTTAGCTCTCCCTGCCTTGTAAAGACACCTCACTGGCCATTGTTTCTCCCCTGGCTGGATCTTGATGAAGCCAGATATCCC
GCTTAAGTACTTCTCAGCAAACCCAGAAGGCAAGTACATGATGCAGCCTCTGTAGAGATAAGATGGTCGCAGAACAACTCTAAAGA
ATGGATTGGTTGGTTCGCAGGTTTTGGATGCAGTGATGGCTCTCTCTCTTTCCTCTGCAGTTGCAGTTCGCATTCTTGCAGAAGCA
CTTTCATAGAACTTTGAGCGGTTCTCTGAGTCCTCTCAACGTGGAGTTGACGAGTTTGTTTCCTCCTCGGGATTAGGATTCTTCTT
CTTCCTTCCTCTCTTCTTAAGTACTTTTGGCGTCGTAGCTTCAGGTTTTGATTCAGCGAACAAGTTTTGAGTGGTTGTAGAAGCGT
CATACCGGGGTGTGGTAGATTCAGGGATCATTGAATGAATCACCTTGGAGTCTTTGTTTTCACGATCCTCAAACAATCTAGCGCGT
TTGTTGAACTCACTGTTTGCTGAATCCATGTTCATAAGAGCACTTGAAATGTTCTTTGGGAGTGAAAATTAAAAGGACCCGTCTTC
AAACCAGATTGTGTTGTCAGCTTTACTTAGTCCTAAGTAAAGAGATAACGAAGAAGAAGAAGAAGGGAGTCAGATCATGAAACGAC
GCCGGAGAGTTCGATGAAGCCCTTTTCAGATCTGAAACCAAGTTTAAGAAGTTTTGACTTTGGTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ34322 unnamed protein product [Thellungiella halophila]9539e-101
AAK68808 Unknown protein [Arabidopsis thaliana]9233e-097
XP_002894192 hypothetical protein ARALYDRAFT_891847 [Arabidopsis lyrata subsp. lyrata]9223e-097
NP_564547 B3 domain-containing protein REM19 [Arabidopsis thaliana]9171e-096
BAB01695 unnamed protein product [Arabidopsis thaliana]8382e-087

Swiss-Prot top hits (Blast detail)Scoree value
Q9XIB5 B3 domain-containing protein REM199176e-098
Q8L3W1 B3 domain-containing transcription factor VRN17804e-082
Q2R9D2 B3 domain-containing protein Os11g01976001542e-009
Q2QMT2 B3 domain-containing protein Os12g05923001461e-008
Q8S2E6 B3 domain-containing protein Os01g07235001424e-008

TrEMBL top hits (Blast detail)Scoree value
Q6R2U8 Reduced vernalization response 17951e-082
Q6V0J6 Reduced vernalization response 17888e-082
B9RZH6 DNA binding protein, putative5924e-059
B9N4T6 Predicted protein (Fragment)5881e-058
B9NJ20 Predicted protein (Fragment)5541e-054

Arabidopsis top hits (Blast detail)Scoree value
AT1G49480.1 RTV1 (related to vernalization1 1); DNA binding / transcription factor9184e-099
AT3G18990.1 VRN1 (REDUCED VERNALIZATION RESPONSE 1); transcription repressor8342e-089

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  50%
 
91  50%

Unigene MembersMember information