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Information for unigene UN40054

FASTA Sequence
Unigene ID: UN40054Length: 1165 SSR 
CGAGCAGGGACCAAACTACTAGAATGAAAACAGAGTTACATCTTTTAATGAAAAACGTAAGTTGACATAATTTTTGATCATTTACA
GAGACGTCAGAGGATAGTATCATTTTTGTTTTTGTTTTTGTTTCTTCTCGTTTCTCCATCAGACAAAAACTACTTACACTAGAGAG
ACAGACATACATGTCAAGAGGGAAGAAAGAAGTAGTAAAGATGATATGTGATGAAACATTGTGAGGTAGACTCACCAATCTCTCAG
CATTCACATCTCTTTGCTAATGTTTTCTTTACTCCTCTCACAATCTTACCGAACCATATCAAGTTCATGACACCAAGCGCAGCTGG
TACCCCAAATACCAGAGCGTATCCGAAGATGTGCATCCTCATGACCTGGTTGTAGTGCAGATAGACATGATAAAACATGTATATGA
ATAGAAGAATTCTAGCAACCAGCCAAGCCAAGAAGATGAAAACGCCATTGACAACATAAGCCATTGACTTCTTCATACCAGCTGTG
TCCAGGTACCATCTCAAGTTGATCTCTGGGGTTGTAATCTCAGAGATGAGGACCATGTATGTATACAACTGTCCTTCCCCAGAAAA
CAAGGAGTAGGCAACAGCTACCCCCGAGAGCGAGTGATGGACAATATACTCAAGTCCACCCAAAGAAGGATATTTCCAGAAGATCA
TCCCAAGATCAGCAATGAAGTAACCAATGGATAACCCTAAACCAAGAGAGGAAAGACGTGAGCTGCGGAAGACAACAAGATCATTG
TGCCACCTATCAGAAAAGAGATCGGACCAGAAGACAAAGTAGAGGGACATTGCGGAGATAAAGATAGCATGAACCGTCGAGATACC
ACGGTTGTTCCATTCGATACGTTGAATCTTGGTGAGGATGATATAGGTCTTGGAATGGGAGTTGCTGATGAAGTGACAAAGATCAT
AGACCACTTTGCAGAGGAACATGCCGGTGAGAATAGAAGTCGACGACATTGCAGAGATTATTATTATTTTATTTATTTTGATTTTT
GATTTACCGATTCCTCATCTCATCATTCGCCACACCACCCTCGTGTAGGGGAAAATATCTCGGAGAAATGGACGCAAAGGAAGAGA
GGATCAGCGGCGAGAAAAGTGAGAGAGAGAGAGTGAGAGAAAGGAAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_564377 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]12631e-136
XP_002893848 hypothetical protein ARALYDRAFT_473644 [Arabidopsis lyrata subsp. lyrata]12602e-136
BAH19941 AT1G31300 [Arabidopsis thaliana]12495e-135
XP_002263050 PREDICTED: hypothetical protein [Vitis vinifera]9762e-103
CBI29075 unnamed protein product [Vitis vinifera]9744e-103

Swiss-Prot top hits (Blast detail)Scoree value
Q6PGS5 Transmembrane protein 56-B2294e-018
Q8CGF5 Transmembrane protein 562285e-018
Q5XIY2 Transmembrane protein 56-B2106e-016
Q96MV1 Transmembrane protein 562009e-015
Q6GLX2 Transmembrane protein 56-A1873e-013

TrEMBL top hits (Blast detail)Scoree value
Q93Z82 At1g31300/T19E23_1212637e-137
B9DGS4 AT1G31300 protein12493e-135
Q8GSI6 At4g196459412e-099
B9ICG7 Predicted protein9188e-097
B9NA48 Predicted protein9081e-095

Arabidopsis top hits (Blast detail)Scoree value
AT1G31300.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19645.2); Has 478 Blast hits to 478 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).12643e-139
AT1G31300.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19645.2); Has 478 Blast hits to 478 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).12643e-139
AT4G19645.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 401 Blast hits to 401 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 102; Plants - 84; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).9419e-102
AT4G19645.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 401 Blast hits to 401 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 102; Plants - 84; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).9419e-102
AT4G10360.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 453 Blast hits to 451 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 97; Plants - 91; Viruses - 3; Other Eukaryotes - 37 (source: NCBI BLink).6721e-070

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
74  100%

Unigene MembersMember information