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Information for unigene UN40083

FASTA Sequence
Unigene ID: UN40083Length: 1030 SSR 
GGACAAGCCCTAAGATTTCTCGATTAACGACAGTCGCCGAGTGAGATAAGAGAGAGAGAGAGATGACGCTTAACGATGAGCAAGAG
CATGAGGTGTACGGTGGAGAGATCCCAGAGGGGGAAGGAGAGATGGAGACGGATGAGTACGAGGAACACGTCGGCGAAGAAGAAGG
CGCCGCCGCCGCCGGAGGAGACGAGGAGCTTGAACCAGGCTCTAGCTCTAAGGATCTGGAGGATATGAAGAAGCGAATCAAGGAGA
TCGAGGAAGAAGCTGGAGCTTTGCGTGAAATGCAAGCCAAAGCTGAGAAAGAAATGGGCGCTGATCAAGATCCATCAGGTGCTATT
AGTTCTGCTGAGAAGGAGGAAGTTGATTCCCGTTCAATCTATGTTGGCAATGTGGACTACGCATGTACCCCAGAAGAAGTCCAGCA
ACATTTCCAGTCATGTGGAACAGTCAATAGGGTTACGATTCTGACAGATAAGTTTGGCCAACCCAAAGGTTTTGCATATGTCGAAT
TCGTGGAAGAAGATGCTGTTCAGAATTCTCTTATCTTGAACGAGTCAGAGCTGCATGGTCGCCAAATTAAGGTATCAGCAAAGAGA
ACTAACGTCCCTGGAATGAGACGGTTCCGAGGAAGGCGTCCCTTTAGACCCATGAGAGGATTCATGCCTGGAATTCCATTTTATGC
TCCATATGGTTATGGGAGAGTTCCCAGGTTCAGACGGCCAATGCGCTACAGACCATACTGATTTAAAGTAAAAACGCTGGTAAAAG
TAGCAGCTGCCTTTTACTTTCAGTAAGGCTGTTATCATCAATCCGTGTTTCATTAGGCCGCACACACGTTGCTTCGATTAGACAGA
GGTGGGTTGAAGAATCTTATGGCAGAAGAGAGAGAGGCGAAGAAAGAAAAAATATGTTTTAGATTTTATGTACAATGTTTCATGGG
ATAAGAGCAACAATTTGAATTCGTTTCTGTTTTTATCTTTTGCAAACTCATAAAGCTTTATATTGAGAATGACCTTTCCACATT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002864097 hypothetical protein ARALYDRAFT_918145 [Arabidopsis lyrata subsp. lyrata]10523e-112
NP_568751 polyadenylate-binding protein 1 [Arabidopsis thaliana]10488e-112
AAM61036 contains similarity to poly(A)-binding protein II [Arabidopsis thaliana]10452e-111
BAA97374 unnamed protein product [Arabidopsis thaliana]9681e-102
AEN74948 poly(A)-binding protein 1 [Citrus sinensis]8759e-092

Swiss-Prot top hits (Blast detail)Scoree value
Q7ZXB8 Polyadenylate-binding protein 2-B3988e-038
Q9DDY9 Polyadenylate-binding protein 2-A3952e-037
Q6NVP7 Polyadenylate-binding protein 23915e-037
Q86U42 Polyadenylate-binding protein 23881e-036
Q28165 Polyadenylate-binding protein 23871e-036

TrEMBL top hits (Blast detail)Scoree value
Q93VI4 AT5g51120/MWD22_610485e-112
Q8LG48 Contains similarity to poly(A)-binding protein II10451e-111
Q9LU62 Similarity to poly(A)-binding protein II9681e-102
C6T4N1 Putative uncharacterized protein7682e-079
B7FL26 Putative uncharacterized protein7663e-079

Arabidopsis top hits (Blast detail)Scoree value
AT5G51120.1 PABN1 (POLYADENYLATE-BINDING PROTEIN 1); RNA binding / poly(A) binding / protein binding10538e-115
AT5G65260.1 polyadenylate-binding protein family protein / PABP family protein7015e-074
AT5G10350.1 polyadenylate-binding protein family protein / PABP family protein6622e-069
AT5G10350.2 polyadenylate-binding protein family protein / PABP family protein5951e-061
AT2G16940.1 RNA recognition motif (RRM)-containing protein1325e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  100%

Unigene MembersMember information