 |
Information for unigene UN40110
| FASTA Sequence |
| Unigene ID: UN40110 | Length: 934 |
SSR | | ACGCTTAAAAATTACCCTCAGCCAAAAGTGATTAAGCAACACCAGTTTCTAAAGAGAGTACAACAACCATAGATCAAGCAGGAGCA
GCAGTTTATTAGAGATTACAACCAAAAATAGCTTAAGCAGCAGCAGTTTATTAGAGAAGCTCCTGATCGAAATGCCATGTCCCATG
TCCTTTGCCGAGTCTTCTTAGTTGAGAGACGTACTCCGAGATTTTTAATTGCTTCAACCTGTTCGTTCAAAAACACGCTCTCAATG
AAATCAGCCAACTGGACATCATCGTTCTTGGAAGCCACACTGTGCAGGTTTAGGAGTTTTTCATTGACCAGTTTCTCCAATGATAG
AGCCAACTCCATGGCATAGAGAGCATCTCCTTTCTCAGCGTGGTCAAACTCAGACTGAGGCATCACCATAGGCTGTAGTTTAACCC
TCCCACCACGTTTGTTCTGATACTCCATCAACATCTCAGCGTGGTCTCGTTCTTCCACACTCGAGTCCTTGAAAAACTTGGCAAGA
CCTTTGAGAGCAACGTTGTCACGATCGAAGTATGCGTACAGAGCGTGATACACATAAGACACGTTGTATTCAACATTGATCTGCTC
GTTCACGGCGGCTTCGCACTCAGGGGAGTACATATGTCGAGCAAGAGAGAGCTGCGGACTCGAAGGGACGAGATCGAGTTCTTTCT
TCACTTCCACAAACGGCTCGAAAACGACGCCGCTTAGTGGCTGCGTGGAGGCGCGAACAGAGAAGGAGAGGTTTTTCCCGGAGGTG
AAGAGAGGAGAGACGTCCTTCTTCACACCGTGAACGTTCATGAGGGAGAACGTAGAAGCAGTTTTGAGAAGCATCTTTGAATCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGCAGCGAAGAAATGGGAAGAGGGAAGAAGGGTTTGTGTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_001146869 ferritin-1 [Zea mays] | 891 | 1e-093 |
| BAJ34006 unnamed protein product [Thellungiella halophila] | 866 | 8e-091 |
| ABB22752 ferritin [Chorispora bungeana] | 857 | 9e-090 |
| XP_002878066 ATFER3 [Arabidopsis lyrata subsp. lyrata] | 849 | 8e-089 |
| NP_191168 ferritin 3 [Arabidopsis thaliana] | 841 | 7e-088 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LYN2 Ferritin-3, chloroplastic | 841 | 3e-089 |
| Q9S756 Ferritin-4, chloroplastic | 764 | 2e-080 |
| Q948P6 Ferritin-3, chloroplastic | 744 | 5e-078 |
| Q8H1T3 Ferritin-2, chloroplastic | 724 | 1e-075 |
| Q41709 Ferritin-2, chloroplastic | 716 | 9e-075 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G56090.1 ATFER3 (ferritin 3); binding / ferric iron binding / oxidoreductase/ transition metal ion binding | 841 | 3e-090 |
| AT2G40300.1 ATFER4 (ferritin 4); binding / ferric iron binding / oxidoreductase/ transition metal ion binding | 764 | 2e-081 |
| AT3G11050.1 ATFER2 (ferritin 2); binding / ferric iron binding / oxidoreductase/ transition metal ion binding | 699 | 8e-074 |
| AT5G01600.1 ATFER1; ferric iron binding / iron ion binding | 647 | 8e-068 |
| AT3G61010.1 glycosyl hydrolase family protein 85 | 193 | 4e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
