 |
Information for unigene UN40151
| FASTA Sequence |
| Unigene ID: UN40151 | Length: 838 |
SSR | | GAGAGAGAGAGAGCGATCACAGGCGAATTGAGCACTTTGTTTCTCTGGTTGGGTGGGATACAGAGTGAGTGATAATGGGGAGGAGC
TATAGTTACAGTCCATCACCACCAAGGAGAAGGTACAGAAGCCCAAGTCCCGTGGGACACTACAGAGGTCGGAGTAGAGATCCCTC
AACCAGTCTACTTGTTCGCAATCTCCGGCTCGACTGTCGGCCGGATGATCTCCGTAGACCATTTGGGCGGTTTGGTCGTCTCAAGG
ATATCTACATACCTCGTAACTATTACACTGGGGAGCCTCGCGGATTTGGCTTTGTGCAGTACTATGATCCTGCTGATGCTGCAGAT
GCAAAGTATCATCTGGATGGCTATGTTCTTCTAGGCCGCGAAATCACTGTGGTGTTTGCAGAGGAGAACAGAAAGAAGCCTTCTGA
AATGAGAGAACGATCAAGGGGAAGGACATCTACGAGATCTCCATATGGTTACTCCCGGTCTCCTGGCTATTCACGTTCGCCAAACT
ACAGGAGGAGCTACTCACGTTCGCCAGTCCACAGGAGAAGCTACTCACGTTCGCCAGTCTACAGGAGAAGCTATTCACGTTCGCCA
TATGATGAAAACCGTTCAAGGAGGCGAAGGCGATCGTACTCAAGATCAAGCACAAGATCTCGCTATGAGTCGAGAAGCAGAGCCAG
AGTCCTGGATACTCTCGCTGATTTGCTATATAACCCAAGAATGTGAAGATGGGGTGTGGTCTCTCTCACACTCTGCTTGTTTAGTT
CATGTATGAAAAAAATAATAAACCATAGTTTGGAGTTAAGAGGACAAACGTATCTATGAGTTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002531582 serine/arginine rich splicing factor, putative [Ricinus communis] | 648 | 1e-065 |
| NP_001173443 Os03g0374575 [Oryza sativa Japonica Group] | 646 | 2e-065 |
| ABF96206 RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] | 645 | 3e-065 |
| AAP46199 putative splicing factor [Oryza sativa Japonica Group] | 644 | 4e-065 |
| XP_002465213 hypothetical protein SORBIDRAFT_01g034200 [Sorghum bicolor] | 621 | 2e-062 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O75494 Splicing factor, arginine/serine-rich 13A | 349 | 3e-032 |
| Q9R0U0 Splicing factor, arginine/serine-rich 13A | 349 | 3e-032 |
| Q8WXF0 Splicing factor, arginine/serine-rich 13B | 305 | 4e-027 |
| P30352 Splicing factor, arginine/serine-rich 2 | 295 | 5e-026 |
| Q3MHR5 Splicing factor, arginine/serine-rich 2 | 290 | 2e-025 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9T013 Serine/arginine rich splicing factor, putative | 648 | 9e-066 |
| C7J0R1 Os03g0374575 protein | 646 | 2e-065 |
| Q10KQ7 RNA recognition motif family protein, expressed | 645 | 2e-065 |
| B8AQ95 Putative uncharacterized protein | 644 | 3e-065 |
| Q7Y171 Putative splicing factor | 644 | 3e-065 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G55310.1 SR33; RNA binding / protein binding | 551 | 1e-056 |
| AT3G13570.1 SCL30a; RNA binding / nucleic acid binding / nucleotide binding | 549 | 2e-056 |
| AT1G55310.2 SR33; RNA binding / protein binding | 546 | 4e-056 |
| AT3G55460.1 SCL30; RNA binding / nucleic acid binding / nucleotide binding | 397 | 7e-039 |
| AT5G18810.1 SCL28; RNA binding / nucleic acid binding / nucleotide binding | 386 | 1e-037 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
