RadishBase

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Information for unigene UN40156

FASTA Sequence

Unigene ID: UN40156	Length: 860	SSR
GGTAGTCCATTTTAGTTTTTATTGAGCTATAGAGACTCCAATCCAATGGGTTCAACTCAAACTGAGTTTTACATAATCAAATCAAA TAAAATGCACTCACATGAAGAAACAAATCAAGAGCAGAATGCTCAAATCTGTGACCCACTAAAGAGTTACAAACTCCAGAATCAAG TTCAGCTGCAAACTCTTTAAATTGTACTCAAACTCGCTCATTAAGATTGACCAATAAATCTGTGACAGTACTGCAAATAAGGGGGA AGAGAGAGAGAGCAAATTATAAATGGGTCCTTCTCCTACATCTTCTCTAATCACTTTTACCCTCCTGAGATCCAATCTCCTGTAAG TAATGCTCTGCGTCCAAGGCTGCCATACACCCAGTTCCTGCAGCTGTGATGGCCTGCCTATACTTCTTATCTTGCACATCTCCAGC AGCAAAAACACCAACAACACTCGTCTTAGTTGTACCAGGCTTAGTCACCACATAACCATCTTCATCAAGCTCAACCTGACCATCTA AGAACTTCGTCGCTGGCTCATGCCCAATCGCGAAGAACAAACCAGACACCTTCAAATCAGAAACATCACCAGTAACAACATTCTTC ACCTTCAAACCCCCAAGAACTCCTTTCCCGTTCTCATCTCCATACGCCTCAACCACAGAAGAGTTCCAAATCACTTCAATCTTAGG GTTTGACAACGCTCTCTGCTGCATGATCTTAGACGCTCTGAAGGTATCTCTCCTGTGGATTATATAAACCTTGGAACCATGACGGC GGAGGAGGATGAAGAAGAAGACGTGGAGGAGGAGGAGGAGGATAGAGACGGCGCGTTTAGAGCAGACGCGGAGAGAGCAGGTCCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002884056 thioredoxin reductase [Arabidopsis lyrata subsp. lyrata]	770	1e-079
NP_179334 NADPH-dependent thioredoxin reductase A [Arabidopsis thaliana]	761	1e-078
Q39242 RecName: Full=Thioredoxin reductase 2; AltName: Full=NADPH-dependent thioredoxin reductase 2; Short=NTR2; AltName: Full=NADPH-dependent thioredoxin reductase A; Short=AtNTRA	761	1e-078
AAM20607 putative thioredoxin reductase [Arabidopsis thaliana]	761	1e-078
BAE98622 putative thioredoxin reductase [Arabidopsis thaliana]	761	1e-078

Swiss-Prot top hits (Blast detail)	Score	e value
Q39242 Thioredoxin reductase 2	761	5e-080
Q39243 Thioredoxin reductase 1	714	1e-074
Q6ZFU6 Thioredoxin reductase NTRB	648	6e-067
Q69PS6 Thioredoxin reductase NTRA	643	2e-066
Q6FR39 Thioredoxin reductase	455	1e-044

TrEMBL top hits (Blast detail)	Score	e value
B9I0K8 Thioredoxin reductase	685	5e-070
B9SRA3 Thioredoxin reductase	680	2e-069
Q8VX47 Thioredoxin reductase	650	6e-066
C5Z291 Thioredoxin reductase	649	7e-066
B8AHL2 Thioredoxin reductase	648	1e-065

Arabidopsis top hits (Blast detail)	Score	e value
AT2G17420.1 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A); thioredoxin-disulfide reductase	762	3e-081
AT4G35460.1 NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B); thioredoxin-disulfide reductase	715	1e-075
AT2G41680.1 NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase	382	4e-037

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	4			100%

Unigene Members	Member information