RadishBase

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Information for unigene UN40176

FASTA Sequence

Unigene ID: UN40176	Length: 1258	SSR
GGGTCTTCCTCTTCCCGACGACACCATACGAACTCTCCCTTTCTCAAACCGTATATCTGAGTAACCGATGACGCTCTTTAAGACTC TTTCATAAAGGTTCCCATTCAATCATAGTTAAATCCGATCTCCGGAGCTATGGTTTCCACAGATTCATCGCTCCTCACTGCTCAAA ATTTAGAAAACTTATTGTACTCGAACCGTCATAACCCGCCTACTTCGTTTTGGAAGCTAGAAATGTGAAGAAAGCTGGTGAACTCA TGGGCGTTGACATGTTGCTCTTGGACGATCAGGTTGTTGTTGTTTCACTTGCAACTGTTTCGTCTTTGTTATTATTTCTTTTTTTA GTTTCAATACTGAGACTGTTTCATCCTTCTTATTACTTTTCGTTTACTGTGGTTTACTTATCGTTCTTGTATCTGTTCATCGTCTG AACATGATGGAGCTTCTCAAGGAGGGAGCCATCGTCGCCATCCGACTTAACGAGTTTACGAATATGGACGAAGTGACTATTGTTGC AAACCATTCCATGCGTCTGACTCTACTATGTTTGTGGGTTTTGATAGACGATAGTGAGATGAACAAACTTGGGACCGTTTCTTGAT TCTCTCTCTCTCTCTCTCTCTCTTCACCTCTCTCAGTAGAAGGTAGTATATATCTCTTGGAACCGGATTCATAATCACCACGAGTT ACGCCGGACCAGGATCCAGTGCCGCCGCTGCCAACAGAAGTTCTTGGACATCCCTAAGTCTCTTACTCTTAGGTGGTTTGAAGGTG AAGAACCTTGTTACTGGTGATGTTTCGGATTTGAAAGTGTTTGCGTTGTTCTTTGCTATTGATGGGTATGTGGTGACCAGGCCGGG TACTACTAAGACGAGCGTTGTTGGTGTGTTCGCTGCTAGAGATGTGCAAGACAAAAAGTATAGGCAGGCCATTACAGCTGCAGGAA CTGTGTGTTTTGCGTTGATTACCATTTCATTGTGAGACCATTTTAAGTGGTTTCAGGAGTCTTTGTTGAGATGAACAATTTTAGAA AAAACGTTTGATTGCTCTGTTAAAATTTAGCTGTGTTTTTGAAAGTCATTAGCTTTTTATGGTGGAACCCATTCATGTTCTCAAAG TGTGGCTTTGTATATCGTTTGGCTGAGACATGATTTGTGTTTGCTATAGAGTGTTCATGTGGTGTGTGGTTAAAGTCAAAGTTCAT GCTTTTGTCTGTATATCATTTGATTAACTTAAGTAAGTAGTTTGAGACATGCTG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_179334 NADPH-dependent thioredoxin reductase A [Arabidopsis thaliana]	192	2e-012
Q39242 RecName: Full=Thioredoxin reductase 2; AltName: Full=NADPH-dependent thioredoxin reductase 2; Short=NTR2; AltName: Full=NADPH-dependent thioredoxin reductase A; Short=AtNTRA	192	2e-012
CAA80655 NADPH thioredoxin reductase [Arabidopsis thaliana]	192	2e-012
AAM20607 putative thioredoxin reductase [Arabidopsis thaliana]	192	2e-012
BAE98622 putative thioredoxin reductase [Arabidopsis thaliana]	192	2e-012

Swiss-Prot top hits (Blast detail)	Score	e value
Q39242 Thioredoxin reductase 2	192	8e-014
Q39243 Thioredoxin reductase 1	182	1e-012
P51978 Thioredoxin reductase	173	1e-011
Q69PS6 Thioredoxin reductase NTRA	172	2e-011
Q6ZFU6 Thioredoxin reductase NTRB	168	5e-011

TrEMBL top hits (Blast detail)	Score	e value
B9I0K8 Thioredoxin reductase	185	8e-012
A9RGV7 Thioredoxin reductase	184	1e-011
A9RGV9 Thioredoxin reductase	184	1e-011
A6XJ26 Thioredoxin reductase	182	2e-011
B9GJZ2 Predicted protein (Fragment)	181	2e-011

Arabidopsis top hits (Blast detail)	Score	e value
AT2G17420.1 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A); thioredoxin-disulfide reductase	192	7e-015
AT4G35460.1 NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B); thioredoxin-disulfide reductase	182	1e-013
AT2G41680.1 NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase	139	1e-008

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	5			100%

Unigene Members	Member information