 |
Information for unigene UN40195
| FASTA Sequence |
| Unigene ID: UN40195 | Length: 1414 |
SSR | | GGCAGTGATGGGATTCGGGAAAGTTGGTACCGAGGTTGCTCGTCGTGCCAAAGGTCTCGGCATGCGTGTGATTGCTCGTGATCCTT
ACGCACCAGCAGACCTTGCGCACGCCATTGGTGTTGAGCTAGTGAGCTTCGACGAAGCCTTGGCTACTGCGGATTTCATTTCGCTC
CACATGCCTCTTACCCCTGCGACGAACAAGATACTCAACGACGAAACGTTCGCCAAGATGAAGAAGGGAGTTCGTATTGTTAATGT
TGCTCGTGGAGGTGTGATTGACGAAGACGCGTTGGTGAGGGCATTGGATGCTGGGATTGTTGCTCAGGCTGCGCTTGATGTGTTCA
CTAAAGAGCCGCCGGCTAAAGACAGTCCTCTGGTGCAGCACGAGAGGGTTACAGTGACACCTCATCTCGGAGCCAGCACAATGGAG
GCTCAGGAAGGAGTTGCTATTGAAATTGCTGAAGCTGTTGTTGGTGCTTTGAATGGAGAGCTTGCTGCTACTGCTGTCAATGCTCC
TATGGTTTCTGCTGAGGTTCTGACTGAGCTGAAACCATACGTGATACTAGCCGAGAAGCTAGGGAGACTAGCGGTGCAGCTAGTGG
CTGGAGGAAGCGGCGTGAAGAACGTGAAAGTCTCATACACGTCAGCAAGAGCCACTGATGATCTCGACACGAGACTGCTCCGAGCC
ATGATCACCAAGGGAATCATCGAGCCGATCTCCGATGTATACGTCAACTTGGTCAACGCTGACTTCACAGCCAAGCAGAGAGGTCT
CAGGCTCTCAGAGGAGCGTGTGCTCTTGGACGGGTCGCCAGAGAACCCGTTGGAGACCATAACAGTTCAGCTGGGGAACGTGGAGT
CCAAGTTCGCTAGTTCCTTGTCTGAGTCAGGAGAGGTGAAAGTGGAAGGAAGGGTTAAAGATGGAATCCCGCATTTGACTAAGGTT
GGGTCTTTTGAAGTGGATGTGACTCTTGAAGGTAGTATCATACTGTGCAGGCAGGTTGATCAGCCGGGTATGATTGGGACGGTGGG
GAGCATTCTTGGAGAGTCTAACGTGAATGTTAACTTCATGAGCGTTGGAAGGATCGCACCGAGGAAGCAAGCGATCATGGCTATCG
GTGTAGATGATCAGCCAAGCAAGGAGACGCTTAAGAAGATTGGAGAGATCCCAGCGGTGGAGGAGTTTGTTTTCCTCAAGCTCTAA
GTTTGCTGCATTGTTGTTGTTGTTGTTGTTGATTTTTGAACCTTGAATCTTGAATGTGAGGGAGGGAGGATTTGATGAAGTGTTTT
ACCTTTACTGGGTTTTAGGCAATAAAGTTTCTTTTGGCATTACTCGAGTGCTTCTTTATTCTCTAGATCATGTTCTCCTCTTGCAA
ACACTATCTGAAACTTGAAGTTAGCCCTTGTTGTAATA
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_195146 D-3-phosphoglycerate dehydrogenase [Arabidopsis thaliana] | 1893 | 1e-209 |
| XP_002867129 hypothetical protein ARALYDRAFT_491252 [Arabidopsis lyrata subsp. lyrata] | 1893 | 1e-209 |
| AAM60833 Phosphoglycerate dehydrogenase-like protein [Arabidopsis thaliana] | 1884 | 1e-208 |
| XP_002883891 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1856 | 2e-205 |
| ACJ11736 phosphoglycerate dehydrogenase [Gossypium hirsutum] | 1775 | 6e-196 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O04130 D-3-phosphoglycerate dehydrogenase, chloroplastic | 1578 | 2e-174 |
| O29445 D-3-phosphoglycerate dehydrogenase | 521 | 7e-052 |
| P35136 D-3-phosphoglycerate dehydrogenase | 513 | 6e-051 |
| O27051 D-3-phosphoglycerate dehydrogenase | 495 | 7e-049 |
| P73821 D-3-phosphoglycerate dehydrogenase | 490 | 3e-048 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O49485 Phosphoglycerate dehydrogenase-like protein | 1893 | 9e-210 |
| Q8LGJ6 Phosphoglycerate dehydrogenase-like protein | 1884 | 1e-208 |
| D2D316 Phosphoglycerate dehydrogenase | 1775 | 4e-196 |
| B9RYA3 D-3-phosphoglycerate dehydrogenase, putative | 1766 | 5e-195 |
| B9HS53 Predicted protein (Fragment) | 1755 | 9e-194 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G34200.1 EDA9 (embryo sac development arrest 9); ATP binding | 1894 | 4e-212 |
| AT3G19480.1 D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative | 1620 | 2e-180 |
| AT1G17745.1 PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE); phosphoglycerate dehydrogenase | 1579 | 1e-175 |
| AT5G14780.1 FDH (FORMATE DEHYDROGENASE); NAD or NADH binding / binding / catalytic/ cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor | 205 | 3e-016 |
| AT1G72190.1 oxidoreductase family protein | 204 | 3e-016 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
