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Information for unigene UN40197
| FASTA Sequence |
| Unigene ID: UN40197 | Length: 1081 |
SSR | | GGGAGACGAGTCTCTCTCTCTCAGAAATTGTAGACTAGTTTCCTAAGTTTACCTTTACCTCATCACAGTTTCGTACTAACTCGAGA
GCCCAAGAAATAAGAAAGAAGAAAGAAGAAACACGAAACAATGGAGAATCTATTGGGACTTCTCAGAATTCATGTGAAGAGAGGTG
TGAATCTCGCCATCAGAGATATCGCAAGCAGCGATCCCTACATCGTTTTTAACTTCGGAAACAAGAAGCTGAAAACCCACGTGGTC
AAACATAATGTAAACCCAGAGTGGAACGATGATTTGACTCTTTCTGTGACTGATCCAAATCTCCCTGTTAAACTTACGGTTTACGA
CAAGGACATACTCTCTGCGGATGATAAGATGGGAGAAGCAGAGTTTAGCATTGCTCCATATCTTGAAGCCATTAAGTTTCGCCCTA
AGATCGAAAGAGGACTTCCCAATGGAACCATAATAATGAAGATACAGCCAAACAGACAGAACTGTCTGTCTGAAGAGAGCCACATT
GTGTGGAACCAAGGCAAGCTTCTTCAGAATATGTTCATTAGGCTCCAGAACGTAGAGTCCGGAGAGGTTGAGCTACAGCTCGAGTG
GATCGATGTCCCCGGTTCAAAGGGTATTTAAGTCACTTCATATCACTCTGACCCGATCCTTATCCCTCGTGCTCGTGCATATATGG
TTTATTTGGCATTGAAGAATCTCAAACTGGTTATGCAATAAGCTCTCTTTTCTTTTGTTCTTTTCGAGCTCAATAAGTGTGCAAGT
CCAGGAGGACTGACTTAGTAAGTGTAACATTTGGATACCAGTTATATTCCTCTCTCGTTTGCTTGAATAGGCAACAAATCAACCAA
CCAAACTTCTGTAAGATGCTAAATTTACCATTGTAACTTAGATGGGGTAAAGTTTCGATCGTACAAAGAATCCTGCAACTTTGTTT
CCTATCCTCTCAAGTTTCTAGATCTAGATGTGTTCTTCTGTAAAAGAATTTCTTGTACAAGGGAATATCGCGATGTATATGTATCA
GGGATCCTATTGTGATAATTATCAATAGAATATTTCTATTATTAAGTCT
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_198590 calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] | 710 | 1e-072 |
| XP_002868538 C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 705 | 5e-072 |
| XP_002302974 predicted protein [Populus trichocarpa] | 614 | 2e-061 |
| XP_002282569 PREDICTED: hypothetical protein [Vitis vinifera] | 612 | 3e-061 |
| XP_002534010 ARF GTPase activator, putative [Ricinus communis] | 609 | 7e-061 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8LFN9 Probable ADP-ribosylation factor GTPase-activating protein AGD13 | 341 | 3e-031 |
| Q8L7A4 Probable ADP-ribosylation factor GTPase-activating protein AGD11 | 331 | 5e-030 |
| Q9FVJ3 ADP-ribosylation factor GTPase-activating protein AGD12 | 328 | 1e-029 |
| Q5RJH2 Multiple C2 and transmembrane domain-containing protein 2 | 143 | 3e-008 |
| Q6DN14 Multiple C2 and transmembrane domain-containing protein 1 | 142 | 4e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FHP6 Putative uncharacterized protein At5g37740 | 710 | 9e-073 |
| B9GV58 Predicted protein | 614 | 1e-061 |
| B9T6Z1 ARF GTPase activator, putative | 609 | 5e-061 |
| A5AXJ3 Putative uncharacterized protein | 607 | 8e-061 |
| B7FGT4 Putative uncharacterized protein | 607 | 8e-061 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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