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Information for unigene UN40208
| FASTA Sequence |
| Unigene ID: UN40208 | Length: 1125 |
SSR | | GGAGACAAAAGCATCACGGCGGAACAGCGAGGGAGAGAGAAAGAGAAAGAGAGAGAGAGGCTTTTCTTCTTCGTCTCGATCTCAAG
ACTTCTTCGATGAACCGTCTGCATCTGCATTTGAAGATTTAAAACGGCCAGGTTGTTGAAATGATGACTGTTCCTCAAAAATTCTC
AACTGGGTAACGAACGTTTGTATCCTCAATTTTTGCGGATCCAATGTGGAGCTTTGCGTCAAACGTGATTGGCAGCATAGGTGGTC
TAAAGAAAGACCACCCACCTCCTCCTCAACCCTCCCATTGCTCAGACGACGAGGAGACGAGGTTTCTAACGTTAGCAGAGACGAAG
ATGAGGAAGAACAAGGACTAGACTGTCCCATCTGCTTCGAATCATTCAACATCGTCGAGAACGTCCCTTACGTCTTATGGTGCGGC
CACACTCTTTGCCAGAACTGCGTCTTCTCCCTCCGCCCTCCTGTTCTCTTGACGCTCTCAGGTCGAGACGTCAGTCTCCCTTTCTT
AGTCTCCTGCCCTTGGTGTCAGCTTCTTTCCTTCGGGGTCGTTTACGACGGCGTCCTCAAGTTCCCTAAGAAGAACTTCTTCCTCC
TCTGGATGGTTGAGTCTCTCAACGGTGACAGGTCCAGAAGACATGGTACTGGTAGTGATGATAACCACCAATACTGCAATAGCAAT
AGCAATCTGATTGCAAGGCCTGTTGGGAGGAGCCAACCAAGCAGCAGCAGCAGCAGACAGCAGTTCTCGTTCCACAAGTCGATTGA
TTTCTTCATCTCCTTCACCTCCAAGTTTCCTTTTGTGGTTGTTTTCCTTTTGATCGTCTTCTTTGCTATACCTGGCAGCCTCGTCG
TTCTTGCCCTTTACTTCCTCCTCACCATTCTTCTAGCCGTTCCTTCTGGTTTGGTTCTGTATTTTGCCTACCCTATTCTTGAAAGG
TTGGTTCATGAAATTACTTCATGAGAAACTTTCTTGATTTTGTTATTGATTGCAAGCTTGGGAATTGTAATTTGTGGTTTTTGAGT
TTTTTAAATTACTGTTATATGAGCAACTTTGGTTTTGCAGATTTGTGACTTAATTGATGATTGATTGATCATGTATGTGTTTAATT
AATGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002888715 hypothetical protein ARALYDRAFT_476060 [Arabidopsis lyrata subsp. lyrata] | 458 | 2e-043 |
| NP_564959 RING/U-box domain-containing protein [Arabidopsis thaliana] | 456 | 4e-043 |
| AAM65966 unknown [Arabidopsis thaliana] | 456 | 4e-043 |
| XP_002514704 ubiquitin-protein ligase, putative [Ricinus communis] | 429 | 5e-040 |
| XP_002323884 predicted protein [Populus trichocarpa] | 420 | 6e-039 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L9H5 Putative uncharacterized protein | 456 | 3e-043 |
| Q9C546 At1g69330/F10D13.3 | 456 | 3e-043 |
| B9RLT5 Ubiquitin-protein ligase, putative | 429 | 4e-040 |
| A9P947 Predicted protein | 420 | 4e-039 |
| B7FKZ3 Putative uncharacterized protein | 418 | 7e-039 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G69330.1 zinc finger (C3HC4-type RING finger) family protein | 456 | 2e-045 |
| AT3G29270.1 ubiquitin-protein ligase | 365 | 5e-035 |
| AT3G29270.2 ubiquitin-protein ligase | 365 | 5e-035 |
| AT1G74370.1 zinc finger (C3HC4-type RING finger) family protein | 354 | 1e-033 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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