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Information for unigene UN40220
| FASTA Sequence |
| Unigene ID: UN40220 | Length: 1090 |
SSR | | GATAAGCTCGAGACAATTGTTCAAAAAGCCACGTTTGCAACCATGGTTCAAGCCTAAAGAAAAACTCTAGTAAAAAAGAACCTTAT
TGTACTTCTTAACGCATGCATCCATAGTGAAAAAACAAAAAAAACATAAACTTCAAAATCTTTGGCTTCTCATGGAAAAAAAGAAA
AAAAAAAAAACAAAACTAAAATCCAACGTCAATCAAGCTTCCATTGGGAGCTCTCCACAGGCATAAATTCTGCAAGGTTTCTTGGG
AACATCCATGGCACGCGTCTCCTGAAACTCAAGTCTTCTCACAATGTTCATACCTTCAATGACTTGTCCAAACACAACATGCATCC
CATCTAACCATGAAGTCTTGGCGGTGCAAATGAAAAACTGGCTTCCATTAGTATTAGGACCAGCGTTAGCCATGCTCAAGATTCCA
GGTCCAGTATGCTTCAGGGTGAAGTTTTCATCTTCAAACTTGGCACCGTAGATACTAATACCTCCAGTACCATTTCCCTCAGTGAA
ATCACCTCCTTGGATCATGAAGTCCTTAATGATACGGTGAAAGGAAGAACCTTTGTACCCATACTTCTTCTCACCAGTACACAAGG
CACGGAAGTTGTCGACGGTTCTAGGGACAACATCACCAAACAGACCCATCACAATCCTTCCAGCGACTTCACCACCAATCTCGATA
TCAAAGTAAACCTTTTTCGTCACTTTAGCCTGAGGAGGTGGTAGCACTTCTTCTTCCTCCTCCTCAGAGGCCATTGATTTAACACA
AGCTGTTCTCTGGAGCTTGTAAGCTCCTGACAATTGCTTAAGAGGGAAGCTTGTTGCGTAGTGTAGTCTCGAAGAGAGTGAGGAAC
GAGCTCTGAAGCAAAGTGATTGAGGTGTTCGATTTGCAGAAACGAGCTGCGACTTCACACCAATCTGAGAGATGGTGCGAGAAGTG
TGAACCATTTGCAATGGAGACGAAGAAGCCATTGATTGATTGATTGATACTGTAAGAGTTAAAGTGAAGAAGAAGAAGACGACGAC
GACGACTATTATGTGTTGATTGTCTTTGCTTCAGACAAGAGTGTCTACTTCCAGATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_001154684 Peptidyl-prolyl cis-trans isomerase CYP20-3 [Arabidopsis thaliana] | 1099 | 1e-117 |
| AAM63944 peptidylprolyl isomerase ROC4 [Arabidopsis thaliana] | 1091 | 9e-117 |
| NP_191762 Peptidyl-prolyl cis-trans isomerase CYP20-3 [Arabidopsis thaliana] | 1089 | 1e-116 |
| NP_001190159 Peptidyl-prolyl cis-trans isomerase CYP20-3 [Arabidopsis thaliana] | 1086 | 3e-116 |
| AAG40378 AT3g62030 [Arabidopsis thaliana] | 1085 | 4e-116 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P34791 Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic | 1089 | 6e-118 |
| Q41651 Peptidyl-prolyl cis-trans isomerase, chloroplastic | 708 | 1e-073 |
| Q9ASS6 Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic | 696 | 2e-072 |
| Q01490 Peptidyl-prolyl cis-trans isomerase B | 611 | 2e-062 |
| P80311 Peptidyl-prolyl cis-trans isomerase B | 592 | 3e-060 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RN18 Peptidyl-prolyl cis-trans isomerase | 809 | 3e-084 |
| B9GRV8 Peptidyl-prolyl cis-trans isomerase | 781 | 5e-081 |
| C6TJK9 Peptidyl-prolyl cis-trans isomerase | 773 | 4e-080 |
| A5B9P8 Peptidyl-prolyl cis-trans isomerase | 758 | 2e-078 |
| C5XHY3 Peptidyl-prolyl cis-trans isomerase | 744 | 1e-076 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G62030.2 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) | 1100 | 3e-120 |
| AT3G62030.1 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) | 1090 | 4e-119 |
| AT5G13120.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein | 696 | 2e-073 |
| AT5G58710.1 ROC7; peptidyl-prolyl cis-trans isomerase | 576 | 2e-059 |
| AT2G29960.1 CYP5 (CYCLOPHILIN 5); peptidyl-prolyl cis-trans isomerase | 569 | 1e-058 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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