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Information for unigene UN40253
| FASTA Sequence |
| Unigene ID: UN40253 | Length: 1501 |
SSR | | CTCATCAACATAAATTATTCTTCCAATGTCTAACATCAATATAAAATAAACATATAATATTTATGACACTTTTTTTTGGTGGGTTA
TGTCATAATATTTTGCTCCCAAGATAAGATATTATATAGTAAAGAGTCTGTTGCTCAAAAAAAAAAAATAGTAAAGAGTCTGTTGC
TCAAAAAAAAATATTTTTCTTCATCAACCAAAACCAAATCATGAGTCCACCGAAACTGGCTTCATAGCTTCTGCTTCTTTCCTCAG
ATCATCAAACAGAACAGACGACAGATATCTCTCCCCAAAGCTCGCATGAACCGTCACAATGAGTTTGCCTTTGTTCTCTGGCATTT
TCGCCAGTCTTATTGCTGCCACGGTGTTAGCCCCCGATGATATCCCAACCATGAGACCTTCTTTCAATGCCAATTCTCTAGCCATC
TTTATAGCATCCTCACTAGTAACCTCAAGAACGCTCTCCATAACATCCATATCCAAGATATCCGGTTTAAATCCAACCCCATTGCC
TGTGATAGCATGTGGACCTGGCTTGCCACCAATGAGTATGTTACTTTCAGCAGGCTCCACTCCATATATCTTGACATTTGGGTTTT
TAGATTTAAGGTATTGGCCAACACCAGAGACTGTGCCACCGCTTCCAATTCCCATCACAAAGATATCAACGTTCCCTAAAGTATCT
TCCCAAATCTCAGGACCAGTTGTATCAAAATGAATCTGAGTGTTTGCAGGATTAGCAAACTGTTGCAACATATGAGCATCAGGAGT
ACTCTCAAGGAGATCATAAGCTTTCTTAACGGTTCCACCCATTCCTTTGGTTGGATCAGTGAGAACAAGCTCAGCACCAAAAGATC
TCATCGTCACTCTCCTCTCCATGCTGGTGTAAGAAGGCATTGTCATTATAATCTTGTATCCTTTCATAGCCGCCACGAAAGCCATA
CTTATTCCCATGTTTCCTGGAGTTGGCTCTATCAATGTTGTTTTTCCAGGAGTGATAAGGTTTTTCTTCTCTGCATCTGCAACCAT
AGCTAAAGCTGGTCTGTCTTTGACGCTACAAGTAGGATGGAAATGTTCTTGCTTGGCCGCAATATAAGCTCCACATCCTTCAGTGA
CTCTGTTGAGGAACACGAGTGGAGTTCTTCCGATGAGCAGAGAAGCATCGCGTTTGGCCTGAGTTACAGGGAACTCTTTGGGAAGG
TTTCTGAGTCTTTCAGCGAAAGAAGAAGATGCATCGGTGGTGAAGAGCTTCCTCGTGCTTTGGCTGATGCGGGGGATCGTCTCTTT
CGTCAGCAGCCTCCTCCAAACAGTAGCCATTGGTGAATAAACAGAGCAGGAAACAAAGTTCGAAGAGAGAGAGAGAGAGAGAAGCC
AAAAGTCTATAGCAGAGTAGGAGAAGATGAGTCAAAGGTGGAGAAGCAAACCAATCATATAAATGGCTCTAAATACGAGGAATTAA
GACAAATACGTTGTAGAATCATCCTTTCTTCGTGGTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002876613 beta-substituted ala synthase 3_1 [Arabidopsis lyrata subsp. lyrata] | 1668 | 2e-183 |
| NP_191703 cysteine synthase C1 [Arabidopsis thaliana] | 1667 | 2e-183 |
| XP_002301362 predicted protein [Populus trichocarpa] | 1488 | 1e-162 |
| ABK95519 unknown [Populus trichocarpa] | 1486 | 2e-162 |
| XP_002320141 predicted protein [Populus trichocarpa] | 1478 | 2e-161 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P32260 Cysteine synthase, chloroplastic/chromoplastic | 1076 | 3e-116 |
| O81155 Cysteine synthase, chloroplastic/chromoplastic | 1045 | 1e-112 |
| Q43725 Cysteine synthase, mitochondrial | 1030 | 7e-111 |
| Q9XEA8 Cysteine synthase | 1026 | 2e-110 |
| Q00834 Cysteine synthase | 1023 | 4e-110 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9S757 Cysteine synthase | 1667 | 2e-183 |
| B9GQA5 Cysteine synthase | 1488 | 9e-163 |
| A9PGL6 Cysteine synthase | 1486 | 1e-162 |
| B9I8L3 Cysteine synthase (Fragment) | 1478 | 1e-161 |
| B0FTX3 Cysteine synthase | 1468 | 2e-160 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G61440.1 CYSC1 (CYSTEINE SYNTHASE C1); L-3-cyanoalanine synthase/ cysteine synthase | 1667 | 8e-186 |
| AT3G61440.2 CYSC1 (CYSTEINE SYNTHASE C1); L-3-cyanoalanine synthase/ cysteine synthase | 1298 | 5e-143 |
| AT3G59760.1 OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C); ATP binding / cysteine synthase | 1032 | 3e-112 |
| AT3G59760.3 OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C); ATP binding / cysteine synthase | 1030 | 6e-112 |
| AT4G14880.1 OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1); cysteine synthase | 1005 | 5e-109 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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