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Information for unigene UN40293

FASTA Sequence
Unigene ID: UN40293Length: 1649 SSR 
GCACGAGGCTTGGTCTCTTCCGTCTTCCATCGGCTCTTCTGATTACATCGGAAGAGTGTTTGGATAGATTGATGTGAGTGGGGCAA
TTGAACGTTCGGTGCATGAGTGGTAATTGGATAGCTAGTGTTTGTAGGCTCCCTGCTCGCGCAGCCAACTACAGACCAACTATCCT
TCTCAGTTGGTTCACGAGCATATTTATGCTCGTTGACTTGATCCGGGGCCTGTGTTGCGTACCTATCAGAAAGGAATTGCTAAGCT
TTGCTTAAAATATTGTTCGCGGCTTCTCCTTCGTTGGGGAAATCGTGAACACAAAAGCCGGCACTTGTGATCCTCTCGTCTTTGCA
TGATATATGCATTGTTCGCAAAGGTGAATAAGCTGTTGGCTGAGATCTCGGTTGCGGAAGCGTTATGGCGGTGACTCGAAGCAATT
CTTGTCCTGCTAAGCACGTTTGTCTCCGGACAAAAGATGACGGTCAAGTCCACGTCTGTTCCCCCTTTCCTTGTGTTTGCGGGGAT
ATGACGTGGTCTTGCCGTGATTTATGAATGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCA
TGTGTAAGTATGAACGAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTAACTACTACTCG
GATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGCAACGCGG
GCTCTGCCCGTTGCTCTGAGATCAGATGATTCATGATAACTCGACGGATCGCATGGCCTTTGTGCTGGCGACGCATCATTCAAATT
TCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTGGTAACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGG
GAGCCTGAGAAACGGCTACGATGATTGATGTGGATGCTATTGAAGATGATGTTATCGAATCATCCGCAAGTGCTTTTGCTGAAGCT
AAGAGCAAATCAACAGGTGCACGTCGGAGGTCGTTGATGGTTGATGTAGAGTCAGGTGGTTTGACGAGATTGTCTGCCAACAAACG
CAGAAGGATTCCTCCTAACCAACCTGTCATCGACTGTGAGCATGTCTCTGTAGATGTGAGAGAGTCTAGCCCAAAGCCTCCACCAC
CACCACCAGAGGAGCCAAAGTTTTCTTGTCCGATTTGTATGTGCCCGTTCACCGAGGAGACGTCAACCAAATGCGGTCACATCTTC
TGCAAGGGATGTATAAAGACGGCAATATCTCGCCAAGCCAAATGCCCTACTTGTAGGAAAAGGGTGACTGTTAAAGAGCTGATTCG
CGTATTCCTTCCAACCACCAGATGAATATACATCAAAGTCACCAGTCACCTTGTCTAACAGCTCTATCCTCGAATTCGCCTTGGAA
CATATGGAGGGACTTCAGTGACTTGGTGTTTTAGTTCGAATGTTTCACTTTATTGGAAGAGAAATATTCATTGTTTAAGAAGGCCC
TATCATTTAATGGATATCATTGGTAATATTGGATTTGTTCTGTTTCCTAGTTGTTGTTTATGTAATTTAGGTACCTGCAAACATTT
CAGACGATGCCTTAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAM61659 unknown [Arabidopsis thaliana]6082e-060
XP_002865657 hypothetical protein ARALYDRAFT_494930 [Arabidopsis lyrata subsp. lyrata]6072e-060
NP_568701 RING/U-box domain-containing protein [Arabidopsis thaliana]6045e-060
AAK76707 unknown protein [Arabidopsis thaliana]6045e-060
XP_002301799 predicted protein [Populus trichocarpa]4631e-043

Swiss-Prot top hits (Blast detail)Scoree value
Q9CQ29 RING finger protein 1511346e-007
P78317 RING finger protein 41302e-006
Q9QZS2 RING finger protein 41302e-006
O88846 RING finger protein 41302e-006
Q5KB05 Pre-mRNA-splicing factor CWC241249e-006

TrEMBL top hits (Blast detail)Scoree value
Q8LF11 Putative uncharacterized protein6081e-060
Q8GS41 Putative RING zinc finger6043e-060
Q94AH4 Putative uncharacterized protein At5g48655/K15N18.13 (Fragment)6043e-060
B9GQL0 Predicted protein4637e-044
B9IBA6 Predicted protein4583e-043

Arabidopsis top hits (Blast detail)Scoree value
AT5G48655.2 zinc finger (C3HC4-type RING finger) family protein6051e-062
AT5G48655.1 zinc finger (C3HC4-type RING finger) family protein6051e-062
AT5G48655.3 zinc finger (C3HC4-type RING finger) family protein6051e-062
AT3G07200.1 zinc finger (C3HC4-type RING finger) family protein4321e-042
AT3G07200.2 zinc finger (C3HC4-type RING finger) family protein4321e-042

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
151  25%
 
211  25%
 
92  50%

Unigene MembersMember information