RadishBase

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Information for unigene UN40326

FASTA Sequence

Unigene ID: UN40326	Length: 935	SSR
TACAACAGTGAAGATATAATTAATAGAAATTCAGAGTATTTTTGTTTTGAGTAGGGTTGATCCTTAAAAATACTAAAATCATCCAT ACACAACAATGTAACACCAAAGGGAAACGACTAGTAGGAGAGGAGGGATTAAAGAGCTGCTGCCACTAGTTAACACCATAGAAGAG AACGAGTTACAGTCACATTCACCATCAACCTTAGTGAAAGTAAGCAGGAGGAGGAGCCTGGTACTGATAGCAGTTTCCATAGAAGT TCCCATGAGCAGCAGCAGCTGGACTGAAAGTGTAAGTCTGAGGAGGAGGAGGTTGTGCTGCCATGATTGGACCGCTAAGGAACGAT ATGTTGTCATACACATACTGCGGATACCTCTCAGGTATCACTCTACCATATCCTGTCTTACTGTTATTGTTGTTGTTGTTGTCAGT GGCTCGGGGTTGAGGACCACGTGGTCGCTTTGTCTGAGGCTTCGTGGGCTCCGTTGCTCTCTTTTTCTCAGCTTTGGCCTTCTCCA GCTGGAGAATCCTTTTGTGAAGTGGCTCAACTGGGTACTGCTCTTCCAGGTTATGCTCTTCCACACACTTTATCACAGCCTTAAGA CTCGTCAGCTCCCTCTCACTGAACTCATCCTGAACAGCAGGAGATGCATCGCCAGGTCCGCCTTGGGAGGTAGATCTACTTGCCTC AGTCAAGTAACATTTAAGCAACTCAACAGGTGGGAACTGTTCTGTGAGTCCAAACGCAAATGCCAAGTTCACAGCATCAATCTGTT TACCACTGTTCACTAGAACTTCAATCACACCAGGCATTTTTCCAGACAATCCAAGAGAACGGCAAAGCTCAGCCGCCTGGCGGCGA CGCGAGACCATAGGAATCAGCTTCAAGATCTCATCCTCATTGCCAGCAGCATCCATGTCAAGAGTCTCCAGCAGC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_850923 FRIGIDA-like protein [Arabidopsis thaliana]	1011	1e-107
AAM96992 putative protein [Arabidopsis thaliana]	1007	4e-107
ABK94872 unknown [Populus trichocarpa]	683	1e-069
XP_002303026 predicted protein [Populus trichocarpa]	683	1e-069
XP_002320559 predicted protein [Populus trichocarpa]	682	2e-069

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q67ZB3 Putative uncharacterized protein At5g48390	1011	9e-108
Q8L7D6 Putative uncharacterized protein At5g48390	1007	3e-107
A9PER9 Putative uncharacterized protein	683	1e-069
B9GNI0 Predicted protein	683	1e-069
B9IB06 Predicted protein	682	1e-069

Arabidopsis top hits (Blast detail)	Score	e value
AT5G48385.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G22440.1); Has 987 Blast hits to 921 proteins in 78 species: Archae - 0; Bacteria - 16; Metazoa - 58; Fungi - 7; Plants - 873; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).	1012	4e-110
AT3G22440.1 hydroxyproline-rich glycoprotein family protein	298	2e-027
AT4G14900.1 hydroxyproline-rich glycoprotein family protein	281	2e-025
AT1G31814.1 FRL2 (FRIGIDA LIKE 2)	233	8e-020
AT5G27220.1 protein transport protein-related	138	9e-009

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	2			40%


10	2			40%


6	1			20%

Unigene Members	Member information