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Information for unigene UN40330
| FASTA Sequence |
| Unigene ID: UN40330 | Length: 1340 |
SSR | | GGATTGAAGGCTAGTGATTGGTAATAAAAAAAAATAAGAGAAAAAGGAAACTCATAAAAGAAGAAGAAGAAGACAAATACTCAATA
ACAGTCTACGGACATGGAACCGGAGGTATATTCTTCTAGTGGCGGCGTGAGGAATCTTGAAGCGTCGATTAAGGCGTGGCATTTCC
AGATAGCAGTCTATTTCGCCTTCGGATTCTGCTTCTTGAGACTCTTCCTTGATAGATTCGTCTTTCAAAGGATAGCTGTCTGGCTT
TTGAGCACCGCTTCTACTGCGCCTATTAAAATGAACGATGCTTCTACTCTTGCTAAGCTCGTCAAATGCAAGGAGTCTCTGTGGAA
GCTCCTGTATTACGGTGCTTGTGACATATTCGTTCTCAAATTCGTTTTTCACGAGCCATGGGCCACAGATGTCAAACTCTACTTTG
AAGGTTGGCCTAATCAAGAGCTGAAGCTTCCGATAAAGCTGTACTATATGTGTGAGTGCGGTTTCTATATGTATGCTGTTGCTGCC
TTGCTTGGATGGGAGACCAGAAGAAAAGATTTTTCTGTTACGATGTCTCACCATGTCATCACCATCATCCTCCTTGCCTACTCCTA
CTTAACCAGTTTTTTCAGAATTGGAGCAATCATCATAGCCCTTCATGATGCAAGCGACGTGTTTATGGAAACTGCTAAAATTTGCA
AGTACTCTGAAAAGGAAGTTGGAGCGAGTGTTGGTTTTTCACTCTTTGCTCTCTCTTGGCTACTGCTTAGGTTGATTTACTTTCCA
TTTTGGATCATCAGGGCCACTAGCATTGAACTCCTGGATCATTTGGATATGACATCAGGTGAAGGCACCATCATGTACTATTCCTT
CAACACACTGTTACTGATGCTTCTTGTTTTCCACATATATTGGTGGTATCTCATTTGCGCAATGATTGCAAGACTACTTAAAAACA
GAGGACAAGTTGGAGAAGACATAAGATCCGATTCAGAGGATGATGAATAGACACTTTGAAAGCATGACAGATACGGAACATGTTTC
CACTTCTCCAACTAAACTCTGTTGCTGCTGATGAATTTGTTCTCAGTTTCAGCACCTTCTTGATTAGAGTTGGAGGTTAAAAAAAA
TAAAGAGGAAAGGTTATAGTTTTCTTTCTTTAGTTTTGTATTGGTGAGTATATCTCTACATTAGACTGCATATTCTGTTTGGAAAA
TATAAAGAAAACATGGGAAGTCAGGTTTCTTGTGTTGTTGTTCTATGATGTGGTATAAAACGATGTGGAATCCACTTTGTAAATGC
GAATTCCTCTTTGTATGGTTTCCTATTCCATAGCCTTTTTATGGTTTTTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_188557 LAG1 longevity assurance homolog 2 [Arabidopsis thaliana] | 1300 | 7e-141 |
| AAF66103 LAG1 homolog 2 [Arabidopsis thaliana] | 1288 | 2e-139 |
| XP_002885303 hypothetical protein ARALYDRAFT_318682 [Arabidopsis lyrata subsp. lyrata] | 1284 | 5e-139 |
| CBI32408 unnamed protein product [Vitis vinifera] | 983 | 4e-104 |
| XP_002518765 longevity assurance factor, putative [Ricinus communis] | 958 | 3e-101 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LJK3 LAG1 longevity assurance homolog 2 | 1300 | 3e-142 |
| Q84QC0 ASC1-like protein 3 | 881 | 1e-093 |
| Q6NQI8 LAG1 longevity assurance homolog 3 | 680 | 2e-070 |
| Q6EUN0 ASC1-like protein 1 | 635 | 4e-065 |
| Q8W4Y5 ASC1-like protein | 633 | 6e-065 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RYI1 Longevity assurance factor, putative | 958 | 2e-101 |
| B9N4Y1 Predicted protein | 953 | 8e-101 |
| Q10NP1 Longevity-assurance protein containing protein, expressed | 881 | 2e-092 |
| B9HS09 Predicted protein | 872 | 2e-091 |
| A2XET9 Putative uncharacterized protein | 871 | 3e-091 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G19260.1 LOH2 (LAG ONE HOMOLOGUE 2) | 1300 | 3e-143 |
| AT1G13580.2 LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) | 680 | 2e-071 |
| AT3G25540.1 LAG1 | 602 | 2e-062 |
| AT1G13580.1 LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) | 513 | 5e-052 |
| AT1G26200.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Longevity assurance, LAG1/LAC1 (InterPro:IPR016439), TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (TAIR:AT1G13580.2). | 464 | 2e-046 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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