 |
Information for unigene UN40390
| FASTA Sequence |
| Unigene ID: UN40390 | Length: 1151 |
SSR | | ACGTTGATCCAAGAAAAAAAATAAAATAAAAGCTCTCTCCGAAGTCACAAACGCCATGAGAGAAGAAGAGGAAGGAGGAGAAGAAG
GATCAATGAGTAGGAGAAGCAGTCTCTCGAGTTTCCTCAGGGTCTTATCTTCTTACAACTCCAATGTCCTCTTGGCTGCTCTCGTC
TTCCTTCTATTAGTCGTCCTCTTCGTCTTGCTTCTCCATTTCTACGCCCGCTATTTCTGGTCACACTCCGACCAAGTATTCACCTC
CGCTCGACGCCGCCGTAGTAGAAGAAGAAGAAGAAGAACCGTTACGAGACTCATACCTCCGGTTCCACTAGGAGGTTTAGACGGTG
GAGTTTCTCCTTCTGCTGCTGCTGCTGCTGCTGCTTCAACAAGCGATGACAAAGGTTTGGATTCTTCAGTGATTTCTTCGATTCCT
CTGTTCGTGTACGAAGATAACGAGAAAGAAGACAAAGAAGAAGAGGAGTGTGTGATATGTCTGGGGTTATGGGAAGTGGGAGATGT
CGGAAGAAAGTTGAGAAGTTGCGAACATGCGTTTCACGTTGAGTGTATAGACATGTGGCTGTCTTGTCACTCTACTTGTCCTCTCT
GTAGATCCCCTGTTCTCTCAGCTTCAGGTCAAGACAACCTCAAGTCGCCGGCCATTAATGGCGTGGACGAAGAAGAAGAAGAAGCA
GAGGTTAGACTGCAACTGTTTCCACCCGGAGGAGGAGAAGAAAACGACGCCGCCGCCGATGATGATGATCGGAGATTTTCACTGTC
GCTTACTGTGATGGAAGATAATCTCAAAACAGGGGTTGACGAGGAAGGAGGAGAGGTTAGAGTTGAAGTGTTGGATGAGGAGATAG
GATCAAGAGGTGATCGGAGATCAACGTCTTCGGTGGCGTCATCAGCATCGAGTTCGTTGATGAGGATGTTGAGTAGTAGAAGTAGA
CCGGAGGGTAGCAAGTTGTTCCCGACGCAAGATTCATCTCCGTAACAATAAATATATAAACAATTGTCTTGCAAACAGTTTTGGAA
ATGTAAAATAAATAAACAAAGCCCTGTAGTAATCTAGTTTATTAAAGCTTTGGTTGAAGAAGCTAATGATTATGATTACGACATGA
TTTTTTTTTGTCCATGCAAATCAATACTTCTGC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002866275 hypothetical protein ARALYDRAFT_495981 [Arabidopsis lyrata subsp. lyrata] | 966 | 3e-102 |
| NP_200666 RING-H2 finger protein ATL63 [Arabidopsis thaliana] | 960 | 1e-101 |
| XP_002278655 PREDICTED: hypothetical protein [Vitis vinifera] | 258 | 4e-020 |
| XP_002521616 RING-H2 finger protein ATL3F, putative [Ricinus communis] | 255 | 8e-020 |
| ADK92879 ring H2 finger protein [Hypericum perforatum] | 221 | 7e-016 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LUZ9 RING-H2 finger protein ATL5O | 960 | 6e-103 |
| Q9XF63 RING-H2 finger protein ATL1P | 278 | 8e-024 |
| Q8L9T5 RING-H2 finger protein ATL3F | 233 | 1e-018 |
| O22255 RING-H2 finger protein ATL2N | 216 | 1e-016 |
| Q9ZV53 Putative RING-H2 finger protein ATL2C | 207 | 1e-015 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9S6J7 RING-H2 finger protein ATL3F, putative | 255 | 6e-020 |
| Q4FE42 At3g16720 | 233 | 2e-017 |
| B9HXR4 Predicted protein (Fragment) | 227 | 1e-016 |
| Q8W1C6 Ring-H2 zinc finger protein | 218 | 1e-015 |
| A0EVF6 Ring-H2 zinc finger protein | 217 | 1e-015 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G58580.1 ATL63 (ARABIDOPSIS TÓXICOS EN LEVADURA); protein binding / zinc ion binding | 960 | 6e-104 |
| AT1G72310.1 ATL3; protein binding / zinc ion binding | 278 | 7e-025 |
| AT3G16720.1 ATL2; protein binding / zinc ion binding | 233 | 1e-019 |
| AT2G47560.1 zinc finger (C3HC4-type RING finger) family protein | 216 | 1e-017 |
| AT2G18650.1 MEE16 (maternal effect embryo arrest 16); protein binding / zinc ion binding | 207 | 1e-016 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
