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Information for unigene UN40397

FASTA Sequence
Unigene ID: UN40397Length: 1908 SSR 
CGGGCCAACTCTAAATCTGATGATAGAAATACAAAAGAATCATGGAATGATTACAACTATAATTCAATCACATAAGAATAATGACG
ATCCTATAAATAAAAAAGGGTATCACAATCGAAAAAACAAAAGACTTTGTTCTTAAACTGGGAATCTACCGGTCATCTGTATATGC
TCAAGTGTTTTAGGCAAACCATACTTGTTAACCGCTAACCTCCCGGCCCTGAACCCGTCTCCATAAACCGGAAAAGCATCAGACTC
GATTTGGTGCTTGAAAAACTCACCAAGCTTCCTCTCGTACTGCGATCTTGGTCCCTTCTTCACTCCTCTAGAAGAAGGAGAAGATG
ATGATGATGATGCAACATTGCTGTTTCTTGAACCAGCAGCTAACTCGGCTTCTAACCACTTGTGAGCCATCACTTGACATATTCCT
TCTTCAACGTCTTGGCTCAGTGTCCGGAATCCTTTGAGGCGCATCCACGCATGCATCATCTCATGAGCTAGGATCGAACCGGTGAG
TAGCCTAGGGAGCCCAAATAAGATGAGAATGGCAGTGACCTCGCATTGACGCGTTAGCTTGTAAGGCTCTGTAATCATATTCCCAG
CCCAGTTTCCTGTCCCATGCTTCGATCTCTTTCTTACAGTGCTAACAGTTTGTTCTTCTGAAAGACAGAGTCCTCTCGTCTCTGGC
ATGTGATAGTGACCATTCTTTTCACCTTCTCTGGCTTAGTTAAGTGCTTGCCTCTCAACTAAAAGAAGTGGAACGTCCTGCTCCAC
CTTCATGAAAAGCCCTTCGTAGAATTCTTGTATCTGCAAGTAGAGAGGTTGACATTGAAAAGTGTCCATGACCGCTGAGTCCAGAC
ACTCGAGACAAAGTTTCCGTCCATCGTTAAGTTCAACATATCCTGTATTCCTTGGCTCCATTCTTTCACAACTGCAACATCTTGGG
GTAGCATCGTGTTCGTGGGAAGGGCAATACTTCTGGACCCAAAAAGGATGCGCCCTATATTCAATAAGACCAGCATGGTTTGTTGG
AATAAAGAGGCTGCAGACATCACACTTTGGATGATATCTCTCTCTGTAACAAGCTTTGTGAAAAGGGTAGTTCCCAGATGTAGAAA
ACTCGTACTCAGAAATGGGGTGCCTACAGCCATAACATCGAAAACATTCTGGATGCCATAGTGCATTCAAGCAATTAAGATATCTT
CCATGTCCAATCTCCATATTGCACCCAGCACAAATCCTGAAATCCATAGGAAAAGCAGTAGGTCTTGGATAATAAATATCTCCATT
GGCAAATACATTTCCTCCTCCACCTCCACCTCCATGCATATGTCCATTCCCGTATACGTCTCCACCAGCCCCACCATACGCACTCC
CAACATCATAACTGCTTCCATGCTTCTGACGCGGTGTATTATTCCCAACTACCATACTTTCTTGTATGGCTCTAGCGAGTTGCTCA
TCTTCATCCACCATTGCGTATTTCCCTGTATTATTATTGGTCTGTCCTTGACTCTCTTCTAGTAGTGACAATGCGATTGCACGGTC
TATTTCTTCATTCTCCTGCTCGTTAGATGTATCCTCCTCGGAGGTAGGTGGTTCCTGAGTATGATGATGAGTATCATCAGGATCAG
GATCAGGATCTGTATCAGCAGCACTAGGCTCATCATTATCATGTGGATAACTCTGATAATAGCCGCCGCCATTGTGATCGTGGTCA
TTATTCCCAACCCGGAACCTTTGGGTAGAGCCTTTGAAGATCTTGTTAAACCAACCCATAGTAGTAACCCTCTTCTTCCTAGTAGT
ACTAACTAACTATCTGCTCATATAGTCAATGTAAAGCTTAAACTTCTTTCACCTTTGAGAAAAATTAAGGCGAAACCCCTTGGATC
AGAGAGAAGATCTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_173361 protein DA1 [Arabidopsis thaliana]23762e-265
XP_002890326 ubiquitin interaction motif-containing protein [Arabidopsis lyrata subsp. lyrata]23332e-260
AAF82237 Contains a weak similarity to an actin-binding LIM protein, isoform a, from Homo sapiens gi|4504999 and contains multiple LIM proteins PF|00412 and PPR repeats PF|01535. EST gb|N96780 comes from this gene [Arabidopsis thaliana]18502e-204
XP_002301214 predicted protein [Populus trichocarpa]16243e-178
NP_001130817 hypothetical protein LOC100191921 [Zea mays]16073e-176

Swiss-Prot top hits (Blast detail)Scoree value
P0C7Q8 LIM and UIM domain-containing At1g1927024582e-276
P53669 LIM domain kinase 11373e-007
P53667 LIM domain kinase 11364e-007
P53668 LIM domain kinase 11356e-007
Q3MHZ4 Transforming growth factor beta-1-induced transcript 1 protein1321e-006

TrEMBL top hits (Blast detail)Scoree value
B9GP21 Predicted protein16242e-178
B4FAN8 Putative uncharacterized protein16072e-176
B8A2T6 Putative uncharacterized protein16072e-176
B9R7N9 Zinc ion binding protein, putative15803e-173
B8B3H9 Putative uncharacterized protein15354e-168

Arabidopsis top hits (Blast detail)Scoree value
AT1G19270.1 DA1 (DA 1); ubiquitin binding24592e-277
AT4G36860.1 zinc ion binding14511e-160
AT2G39830.1 DAR2 (DA1-RELATED PROTEIN 2); zinc ion binding12565e-138
AT5G66610.1 DAR7 (DA1-RELATED PROTEIN 7); zinc ion binding9384e-101
AT5G66620.1 DAR6 (DA1-RELATED PROTEIN 6); zinc ion binding9331e-100

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
74  80%
 
101  20%

Unigene MembersMember information