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Information for unigene UN40403

FASTA Sequence
Unigene ID: UN40403Length: 896 SSR 
AATAATAAGATTGAGTAGATAAATAGAGAACACCAACCAAAGAGCAATAGCAATAGTAGAAATTAAACAAAATCTTGATCATCCTA
CAGAGTTCTGGAAGTAATCCAAGAAGAAGAAGAAGGCTCATGACAAAAGAAAATCAAATTTCTTATGATACCTTAAAAGATAAAAC
AAAAATCTTAGAAAACACGGGTGGGTGGACTCATTGTGCTCTTCAAGTACAAGCACCTCACATTTTGCCAGTTTTTCTTCAAGGGG
GAAACAAAGAAGTTGACGCTCATCTGAACATTCTGGAAGATCTGCTTCTCCTCCATGCCGAGATTTCCAACAGCGACACCCATGCA
AAGAACCTTCTTAGGATAGAACTTCACTGTTGCCTTGGTCTCATTCACTTTGGATTCCAAAGACCCTTGGTGGCTAACAAGAGTTG
GGAACTTTCCTGCCTTGTTGAGACCAGGACCAAGAAGACGGGGAATCTGTTTAATAACAGATTCAGAAGCAAGGAAAGCATGGAAC
TTCTTAGCTAGCTTCTTAACAAGCTTCTTGTTCTTGTTCAGCTTCTTAAGTGCTTCCACATCCATAGACTCCAACCCAATCTTCTC
AGCCTCTTCAACGTGCTGGGCGTCGCCGAGCATGCAAATCTTCATCTTAGGCCTAGGAATGTGGGGCAACTTAACGGAACCGCTAA
ACCTCTTGTCCTTTTGAGGGTCATAGTTCTTAAGACCAATCTGGAGCTCGATTGTCTCGGTGAACTTGCGAGGCTTCGTCTCCTTG
CAGTGAGTGATGATGGACGATATCGCCTCTCTCACGGCTTCACTCTGGAGCTTACTCATTTTGGCACTTCCTGAGAGCTACTATTC
TCTCCTTTGTGATAGATCGGAGACAGAGAGAGAGCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_197636 60S ribosomal protein L10a-3 [Arabidopsis thaliana]10486e-112
NP_563813 60S ribosomal protein L10a-1 [Arabidopsis thaliana]9634e-102
XP_002889688 60S ribosomal protein L10A [Arabidopsis lyrata subsp. lyrata]9626e-102
BAD09090 putative 60S ribosomal protein L10A (RPL10aC) [Oryza sativa Japonica Group]9492e-100
NP_565654 60S ribosomal protein L10a-2 [Arabidopsis thaliana]9447e-100

Swiss-Prot top hits (Blast detail)Scoree value
P59231 60S ribosomal protein L10a-310483e-113
Q8VZB9 60S ribosomal protein L10a-19632e-103
P59230 60S ribosomal protein L10a-29443e-101
Q9VTP4 60S ribosomal protein L10a-27284e-076
Q963B6 60S ribosomal protein L10a7258e-076

TrEMBL top hits (Blast detail)Scoree value
Q6ZJ04 Ribosomal protein9491e-100
A9NNS9 Ribosomal protein9392e-099
B7F845 Ribosomal protein9382e-099
B7FGL9 Ribosomal protein9382e-099
B8B9K6 Ribosomal protein9382e-099

Arabidopsis top hits (Blast detail)Scoree value
AT5G22440.1 60S ribosomal protein L10A (RPL10aC)10492e-114
AT5G22440.2 60S ribosomal protein L10A (RPL10aC)10492e-114
AT1G08360.1 60S ribosomal protein L10A (RPL10aA)9694e-105
AT2G27530.1 PGY1 (PIGGYBACK1); RNA binding / structural constituent of ribosome9506e-103
AT2G27530.2 PGY1 (PIGGYBACK1); RNA binding / structural constituent of ribosome9506e-103

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  100%

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