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Information for unigene UN40440

FASTA Sequence
Unigene ID: UN40440Length: 990 SSR 
GGGCGGTCAACTTAAAAAGACCAACAAAAAACAATTTGGGATCGAAAGGGGGAAATTAGGGTTTGACAATCGAGATGGATACAAAA
TCAAGCGACGGCGAGAAAAAGGAGGAATCCTCGATCGAGACGGAGCCAATGGAAACTTCCACCGGCGTTGACACTTCCTTGCTAGG
GAAGCTCAAGTTGGAGGAAACACAAGACCAGGAGAGTTCCGGTGAAGAGGAAGTCGACGGAGATGAGGAGGAAGATGAAGTGGAGG
AGGAGGAGGAGGAAGGTAGTGATTTCTATTGGGAGAAGGACAGTTTCGATGGGCGGGAATATCATTCCTCTGACGACAGTGAGTAC
TCAGACGAGGATCTAGGGGAAAAAGCACGTTATTACTATCGCACGGTTATCGAAACCAAGGGTTTCTTTGAGTCATCGAATAAGCT
CCCCATGTACCTTTGGTCTGGAATTGGTGTGGTCTCGAAGCGGGATCTTGACACCAGTCGTGAGTTCATCGGGAACATGGTGTCTG
AATGTGTTGAAAAACACAACCGAAGAAACAATAAGAATGTGAGGTTCGAGCATTTATTGAGGGCTAATTTCGACCCAGGAGCCAAG
ACTAAGTACTACATCACCTTTGCTGCAAAAGAATCCGACTCTCCTGATGCGCCTCTCGTGGAGTATCAAGCTAAGGTGGTTTGGTC
TGCTGGCGTTACTTACCCCATCTTTTGCAGACCCGCTCCACCACCTAAACAGGGGTAGGGTAATGTATATAGCTTTCAGTTATCAC
TCTTTCTTGGACTAGAAGAGATATTAAACATATCATAATAATTAAAAACCTGCTATGTATTTTCTCTTATTTGTGATACAAATATA
ATTTCTACACTTGATGCAAATGTGGGTTCCGTGGATCACAATGTCTTTTGTGATGATCCATTTCAACTGTATTTATTACCTGTGGA
GCCTTGTCTTCAAACAATGTGGAGTCCCAAGTTCGATGGTAAAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002884511 predicted protein [Arabidopsis lyrata subsp. lyrata]6321e-063
XP_002884513 predicted protein [Arabidopsis lyrata subsp. lyrata]5219e-051
XP_002865984 hypothetical protein ARALYDRAFT_357611 [Arabidopsis lyrata subsp. lyrata]3363e-029
XP_002872152 hypothetical protein ARALYDRAFT_351540 [Arabidopsis lyrata subsp. lyrata]3328e-029
AAF64537 hypothetical protein [Arabidopsis thaliana]2611e-020

Swiss-Prot top hits (Blast detail)Scoree value
Q17RH7 Putative protein TPRXL1236e-006
P87179 Cell wall integrity and stress response component 11211e-005

TrEMBL top hits (Blast detail)Scoree value
Q9MA58 F22F7.10 protein2932e-024
B1N4C0 Serine-rich protein C30B4.01c, putative1328e-006

Arabidopsis top hits (Blast detail)Scoree value
AT3G05450.1 LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05685.1); Has 30905 Blast hits to 2528 proteins in 227 species: Archae - 0; Bacteria - 28079; Metazoa - 916; Fungi - 505; Plants - 127; Viruses - 92; Other Eukaryotes - 1186 (source: NCBI BLink).2931e-026
AT1G03710.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17110.1); Has 51 Blast hits to 49 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).2436e-021
AT1G03710.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17110.1); Has 51 Blast hits to 49 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).2436e-021

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
84  67%
 
62  33%

Unigene MembersMember information