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Information for unigene UN40445

FASTA Sequence
Unigene ID: UN40445Length: 1215 SSR 
CAAATTATGAACAATGATGGAGCAATATTAAATGTCAGCACATATATAACGTTCAACGTCTGAAACATGGTTCTCCGCTAAGGTTT
TACAATTCCTAGAACTCATCCAGCTGAATCCGTCACTGTTCTGTTCCTTTCTCTTAGTATGCACATCTCTACTCATCATCAATATC
CTTTATAGCATCCTTTGCAAGGCCAGTTACATATGTTGCAGCTAATGCAGTCACCAACAGACCCAACCCGAGCGTTAGAAGCTGGC
CGTTTCCTCCAGGCAACCCAACAGTTGATTCTTCTTGAATGATAGCTCGTCCAAAAGCTCCAGCGCTGACATAAGCCCAAGATCCT
GGAAGCATACCTAACCAGCTTCCAAGTACATAAGGCACAAACTTGACAGATGTCAAGCCGTAGAGGTAATTGCCAAGAGAGAAAGG
AAGCAGGGGGCTTAGGCGAAGGAGGGTAACAACCCTAAACCCATTCTCACCGATGGCTTTATCAATGGCTAGGAACTTCTTGTTGC
CTTCAACTAGCTTAAGAATACGCTCTCTGGCAAAGTATCTAGCAATTAGAAAAGCAACACTAGCAGCCATAGTTCCACTGATAGAA
ACAATGATGGTGCCAACGAGGGAACCAAAGAGAAGACCAGCCGACATGGTCAACGGGAGAGCCGGAATGGCTAGGATCTCAAGGCC
AGCATAGACCGCAATGAACAGTGCATACCCAGCCGGACCATAACCTTCGATGAAAGTGGAGAACTGAGTGAGAAAGGAATTGATCT
GGTCTCTGTAGACGTATCCAACGCCGGCGAATCCGCCAACAGTACCAACCAACAAAACTCCGGCAAGAATCGTGCCCTTGAGAGCA
GCATCCCCATTGGATCCGTCGTCATCGCTCTCGGCCGCGGGGGATGTAGCAGCGTCGTCTCCGTTACCGTCGTCGCTGGATTTGGG
ATTGAAGAACCATCGGAGACTCTTGGGAGGAGGGGCTGTGGAAGGAGGAGGCGGAGGAGAGCGGCGGAGAGACTGTTGGTTCTTCT
TCGTTTGTTTGAGGGAAGAGCATGGCTTGAGGAAATGGAATCGTCTGAAGGAGGAGGAGGAGGTGAAGGTGAATAATGGAAGGGAA
GAGGATCTGAGAGTTAGAGTGAGGCTGCGCATCTTTCAAGCAGCGTTGACGATGATGATTGAGTTAAAGCTGCTTCTTCTGTTTTC
CATCCAGAAAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002893250 hypothetical protein ARALYDRAFT_472530 [Arabidopsis lyrata subsp. lyrata]13633e-148
NP_564182 SNARE associated Golgi protein family [Arabidopsis thaliana]13581e-147
XP_002525514 conserved hypothetical protein [Ricinus communis]11384e-122
XP_002327389 predicted protein [Populus trichocarpa]11223e-120
ABK95224 unknown [Populus trichocarpa]10604e-113

Swiss-Prot top hits (Blast detail)Scoree value
Q55909 TVP38/TMEM64 family membrane protein slr03053423e-031
P76219 TVP38/TMEM64 family membrane protein ydjX2771e-023
P67117 TVP38/TMEM64 family membrane protein Rv1491c/MT15381783e-012
P67118 TVP38/TMEM64 family membrane protein Mb1528c1783e-012
P76221 TVP38/TMEM64 family inner membrane protein ydjZ1613e-010

TrEMBL top hits (Blast detail)Scoree value
O23137 At1g22850/F29G20_1913588e-148
B9SHP5 Putative uncharacterized protein11382e-122
A9PH39 Predicted protein11222e-120
A9PFS1 Putative uncharacterized protein10603e-113
B9IQ94 Predicted protein (Fragment)10541e-112

Arabidopsis top hits (Blast detail)Scoree value
AT1G22850.1 INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03260.1); Has 3098 Blast hits to 3098 proteins in 664 species: Archae - 6; Bacteria - 1614; Metazoa - 182; Fungi - 59; Plants - 145; Viruses - 0; Other Eukaryotes - 1092 (source: NCBI BLink).13584e-150
AT5G19070.1 LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03260.1); Has 3029 Blast hits to 3029 proteins in 693 species: Archae - 10; Bacteria - 1724; Metazoa - 229; Fungi - 74; Plants - 161; Viruses - 0; Other Eukaryotes - 831 (source: NCBI BLink).2804e-025
AT1G03260.1 LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19070.1); Has 3432 Blast hits to 3432 proteins in 730 species: Archae - 8; Bacteria - 1831; Metazoa - 239; Fungi - 87; Plants - 162; Viruses - 0; Other Eukaryotes - 1105 (source: NCBI BLink).2681e-023

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
201  33%
 
192  67%

Unigene MembersMember information