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Information for unigene UN40466
| FASTA Sequence |
| Unigene ID: UN40466 | Length: 816 |
SSR | | GGGAATGGTGGAGCAAGCAAAAACCGTGTTTAAAAGCATGCGACGAGACAGATTTTATCCGGATCTATGCTCTTACACAACAATGC
TATCAGCGTATGTCAATGCTTCAGACATGGAAGGTGCTGAGAAATTCTTCAAGAGGATAAAAGTGGATGGTTTTGAAGCGAATGTA
GTAACCTATGGGACGATGATAAAAGGTTATGCGAAAGCAAACGATCTTGATAAGGTTGTGGAGGTATATGAGAAGATGAGGTTAAG
TGGCATCAAAGCGAACCAGACGATTTTGACCACTATCATGGATGCGTCTGGGAGGTGCAAGGATTTCGGGAGCGCTCTTAGTTGGT
ACAAGGAGATGGAGAGCTGTGGTGTACCACCTGATCAGAAAGCTAAGAATGTGCTCTTGTCATTGGCTTCGACTCGAGATGAGCTG
GAGGAAGCTAAGGAAGTTACTGGTCTCGTAGATGAGAAGACAGCGAGCCTTGCTGGAGTCTATCGAACTGATGATGATGATGATGA
AGACAATTATATCACTAGTAGTGATGAGGATGAGGATGACTATGAAGATGAGGATGACTATGAAGAAGAAGATGATGATGTTGATG
GTGCAAAAGAAACTGTGTTGTGTGATAACGAACAAGAAGAGTCTTTGGCTTATGTTGGCTCACAGACGGAAGAACTTGTTGGGTTA
TGAAAACTACTACTATATGTTTTGTAATCATCGAATGCTAAAAGAAAGATTTTGCAGAAGAGGACTTGGTAGGTTGTGTCCATTAT
TTGTGTCCGTAGTTTACAAGATGAAATATGTTACTCATTTGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002878256 pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | 797 | 7e-083 |
| NP_191463 pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | 786 | 1e-081 |
| NP_974457 pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | 786 | 1e-081 |
| CAB86932 putative protein [Arabidopsis thaliana] | 786 | 1e-081 |
| XP_002298285 predicted protein [Populus trichocarpa] | 660 | 5e-067 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LYT2 Pentatricopeptide repeat-containing protein At3g59040 | 786 | 6e-083 |
| Q9LR67 Pentatricopeptide repeat-containing protein At1g03560, mitochondrial | 195 | 2e-014 |
| Q9ZUA2 Pentatricopeptide repeat-containing protein At2g01740 | 193 | 3e-014 |
| Q9LUJ4 Pentatricopeptide repeat-containing protein At3g22670, mitochondrial | 180 | 1e-012 |
| Q9FIT7 Pentatricopeptide repeat-containing protein At5g61990, mitochondrial | 175 | 4e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q3EAH8 Putative uncharacterized protein At3g59040.2 | 786 | 9e-082 |
| B9GI17 Predicted protein | 660 | 3e-067 |
| B9T2X9 Pentatricopeptide repeat-containing protein, putative | 594 | 2e-059 |
| C5YIC9 Putative uncharacterized protein Sb07g005470 | 536 | 8e-053 |
| A2YS10 Putative uncharacterized protein | 529 | 5e-052 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G59040.2 pentatricopeptide (PPR) repeat-containing protein | 786 | 5e-084 |
| AT3G59040.1 pentatricopeptide (PPR) repeat-containing protein | 786 | 5e-084 |
| AT1G03560.1 pentatricopeptide (PPR) repeat-containing protein | 195 | 2e-015 |
| AT1G63630.1 pentatricopeptide (PPR) repeat-containing protein | 193 | 3e-015 |
| AT2G01740.1 pentatricopeptide (PPR) repeat-containing protein | 193 | 3e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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