 |
Information for unigene UN40500
| FASTA Sequence |
| Unigene ID: UN40500 | Length: 891 |
SSR | | GGGTCGACGAAAAGAGACAGAGAGAGAGAGAGACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGAGAAAATGGTGAGAGA
AGTGGCGGAGAGCTGTGTAGACACTATGTTGATGGAGATGGTGGCGATGTACAGCGGCAGATTCTACGCCAACAAGCCGGAACTCG
CCGCTCGGAGGATCGAGGCCATCGGTTATCAGGTCGGCCACCAGCTCTCCGAGAGGTACACTATGGAAAGACCAAGGTTCAGCGAC
CATCTAGAGGCAATCAAGTTTATCTGTAAAGACTTCTGGTCTGAGGTTTTCAAGAAGCAGATTGATAATCTCAAGACTAATCACCG
GGGTACTTTTGTATTGCAAGACAACAAGTTCAGATGGCTATCTCGTGTCTCGATTGACCCTTCGTCGGAGAAGGAAACCGAAGATC
CGTCTACTCCAGGGGAAAGCAAAGCAGCACAAGCGGTGAGCATGTACCTGTATTTCCCATGTGGAATCATAAGAGGTGTCCTCTCC
AACTTGGGGATACCTTGTGCTGTCTCTGCAGACATATCCAGCCTTCCCACTTGCTCCTTCGTGATTCGGGTCAAGGCTTGATTCTG
GCATTAGCTTGGAAGTCCTCTCGTTTTCAGATTCCATCTCGGCTTTATGGTTTCAACTTTCAAGGAAGATAACAGTTCTTTGAGTC
CTAAGAGATTTAACTAAAACCCTTCTCAAGGCTTCTTTTTGCTGCGGCTTCTGCCAATTCTCACAACTTTGAATTCCCCCTTCCCT
GTAAAACAATATTTGAATGCCTAATGGCCCTATCTCATCCTAAAAAGCCTGTTAAGTAAGCTTTTCCATTCTTAGTCACGACTTTG
AATTCCGACTTTGGTATAGTTTTTGTCTTTT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_187151 Transport protein particle (TRAPP) component [Arabidopsis thaliana] | 884 | 6e-093 |
| XP_002884484 predicted protein [Arabidopsis lyrata subsp. lyrata] | 790 | 5e-082 |
| ACU14618 unknown [Glycine max] | 758 | 3e-078 |
| ACU19411 unknown [Glycine max] | 755 | 6e-078 |
| ABN08153 Transport protein particle (TRAPP) component, Bet3 [Medicago truncatula] | 752 | 1e-077 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q32L78 Trafficking protein particle complex subunit 6B | 245 | 4e-020 |
| Q86SZ2 Trafficking protein particle complex subunit 6B | 245 | 4e-020 |
| Q9D289 Trafficking protein particle complex subunit 6B | 245 | 4e-020 |
| Q78XR0 Trafficking protein particle complex subunit 6A | 206 | 1e-015 |
| Q3T086 Trafficking protein particle complex subunit 6A | 196 | 2e-014 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9CAW4 Putative uncharacterized protein At3g05000 | 884 | 4e-093 |
| C6SZE5 Putative uncharacterized protein | 758 | 2e-078 |
| C6TC59 Putative uncharacterized protein | 755 | 4e-078 |
| A2Q3F3 Putative uncharacterized protein | 752 | 9e-078 |
| B9REX0 Trafficking protein particle complex subunit 6b, putative | 748 | 3e-077 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G05000.1 transport protein particle (TRAPP) component Bet3 family protein | 885 | 2e-095 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
