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Information for unigene UN40563

FASTA Sequence
Unigene ID: UN40563Length: 1620 SSR 
GGAGTCTTTTGTCTTCTTCTTCATCATCATCTCCATCTCCGTTATCTTCGCTCTTAGACTTAGTGAATCTAGGATTTTGTTTTCTC
TCACAACCCTAGATTGATTGATTTCTTCGATCGTGTTGATCACCCTTTAATTACCTCTCTCTTCATCTCCCTTAGCTCATCATCAT
CCGACAATTTGAATGGAGGGAGTTGAAGATACGACGTCGTCTGAGGGGCATATGATATCGGCAGCAGCTTTTGTGCAAGGGGGAAT
CCAAGATGCTTGTGATGATGCTTGTAGCATTTGCCTTGAATCGTTCTGCGAATCCGAGCCATCAACTTTGACTAGTTGCAAGCATG
AGTATCATCTCCAATGCATTCTTGAGTGGTGTCAAAGGAGTTCACAGTGCCCCATGTGTTGGCAATCAATTAGTCTCAAAGACCCC
ACTAGTCAGGAGTTGCTTGAGGCTGTTGTACAGGAGAGGAACTTCCGCATCAATCCACCTAGAAATGCCACCATTTTTCGTCATCC
AACTCTCGGTGATTTTGAGTTACAACATCTCCCAGTGGGGGTGGATAACGCAGAGATTGAAGAAAGAATCATTCAGCATTTGGCTG
CTGCTATGGGACGAGTAAGACATGGTGCAAGAAGGGAAGGCCACAGAAGCAGGTCATCAACTCAAGGTGGTCATCCACAGTATATG
GTGTACTCTCAGCATCCTCCTCCTCCTCCTCCACCACCAATGCCTTCCTCTCCATCTCAGAGAGATGAGGGTGACATAGCCACTAA
CCTTCCTCACAATGCTACTTTTGGGGAAGGTTCTCTTCAGCCACCAGCTTCTTCTCATCCCCGCCAGGTTTCTCCTTCAAACGGCA
GGTATCTTAATCAATCTTCCCCAAGTGATCAAGATAGAGCTGGACCATCCGAACTCCAATCTTTTTCAGAGTCTTTAAAGTCTAGA
CTAAGCGCTGTCTCAACTAGATACAAAGAGTCTATATCAAAGAACACAAGGAACTGGAAAGACAGATTCTTCTCACGCAACACGTC
CATGGCAGAACTTGGCTCTGAGGTTAAAAGAGAGGTTAGTGCTGGAATTGCCACTGTGTCCCGCATGATGGAACGTCTAGAAACGA
GAGAAAACAGTAGTAGTAGTACTAGTAGTAGACCTGGAACTGCATCTGTATCATCAAATGGCTCAGAAAATCAAAACACTCCTGTG
GAAGCAAACAATGAGCATAATAGAAGATCTGAAGCGGGTGATGAACATTCTTTGAATGAAAGAGGTGTTAAAGGAACATGTGCGAC
TGGTCCTGGTTCTAGCTAATAAAACAAGTGACAGCAATCTTGTTGGCAAAGAGACATGAAGATGTTTCTCATTGTGGAAGTCTGCT
TTATATTACCGAGTCAGAAGTTCAAAGTGTGGGAGCATAGGAAGAGTTTTCTAATTCTTAAAAAATAAAAAAATAATAAGAAAGGT
TATAATGACCAAAAGGAGGCTTTGCTTCAGAAATGAAACGCCTTCTGATGTGTTGTGTTGTGTTATGTCAAAACAAAACTAAAAAG
AAAAAGAGTAAAAGACTGTTGTCCGTCTGTTGTAAATTGCCATTTGTCGTTCACATTATCGATCATTTCTGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002871983 hypothetical protein ARALYDRAFT_489047 [Arabidopsis lyrata subsp. lyrata]15803e-173
BAJ33931 unnamed protein product [Thellungiella halophila]15472e-169
NP_568410 E3 ubiquitin-protein ligase RHF2A [Arabidopsis thaliana]15428e-169
BAH19547 AT5G22000 [Arabidopsis thaliana]15382e-168
NP_851051 E3 ubiquitin-protein ligase RHF2A [Arabidopsis thaliana]15283e-167

Swiss-Prot top hits (Blast detail)Scoree value
Q9ZT42 E3 ubiquitin-protein ligase RHF2A15423e-170
Q4TU14 E3 ubiquitin-protein ligase RHF1A2977e-026
Q9VE61 E3 ubiquitin-protein ligase CG76941392e-007
Q68DV7 RING finger protein 431292e-006

TrEMBL top hits (Blast detail)Scoree value
C6TB16 Putative uncharacterized protein11312e-121
C5WY50 Putative uncharacterized protein Sb01g0057608671e-090
Q2HT04 Zinc finger, RING-type7649e-079
B9GEQ0 Predicted protein7145e-073
B9IIH4 Predicted protein7065e-072

Arabidopsis top hits (Blast detail)Scoree value
AT5G22000.1 RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding15432e-171
AT5G22000.3 RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding15432e-171
AT5G22000.2 RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding15299e-170
AT4G14220.1 RHF1A (RING-H2 GROUP F1A); protein binding / ubiquitin-protein ligase/ zinc ion binding2976e-027
AT4G23450.1 zinc finger (C3HC4-type RING finger) family protein1418e-009

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  40%
 
211  20%
 
191  20%
 
201  20%

Unigene MembersMember information